Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 149 1e-33
>seq3858
Length=18945
Score = 149 bits (164), Expect = 1e-33
Identities = 206/278 (74%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCG-GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| ||| ||| | | |||||||||| ||||| |||||||
Sbjct 4958 ATGCTCTTAGCTGAGTGTCCCGCGGGGGCCCGAGCGTTTACTTTGAGAAAAT-AGAGTGT 5016
Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156
|||||||||||| || | |||| ||| |||||||| ||||||||| | |||||
Sbjct 5017 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 5075
Query 157 CTATTTTGTTGGTTTCTAGGAC-CGCCGTA-ATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||| ||| || | |||||||| ||||| | |||||| |
Sbjct 5076 CTATTTTGTTGGTTTTCGGGAAACGGGGCCCATGATTAAGAGGGACGGCCGGGGGCATTC 5135
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| ||| ||||||||
Sbjct 5136 GTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCA 5195
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| ||| |||||||||||| ||||||||||
Sbjct 5196 TTTGCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 5231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915153370560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |