Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3858 149 1e-33 >seq3858 Length=18945 Score = 149 bits (164), Expect = 1e-33 Identities = 206/278 (74%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCG-GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| ||| ||| | | |||||||||| ||||| ||||||| Sbjct 4958 ATGCTCTTAGCTGAGTGTCCCGCGGGGGCCCGAGCGTTTACTTTGAGAAAAT-AGAGTGT 5016 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| || | |||| ||| |||||||| ||||||||| | ||||| Sbjct 5017 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 5075 Query 157 CTATTTTGTTGGTTTCTAGGAC-CGCCGTA-ATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||| ||| || | |||||||| ||||| | |||||| | Sbjct 5076 CTATTTTGTTGGTTTTCGGGAAACGGGGCCCATGATTAAGAGGGACGGCCGGGGGCATTC 5135 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| ||| |||||||| Sbjct 5136 GTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCA 5195 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| ||| |||||||||||| |||||||||| Sbjct 5196 TTTGCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 5231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915153370560