Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1548 136 2e-29 seq602 102 3e-19 seq372 77.0 1e-11 >seq1548 Length=45218 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 19945 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 20004 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | |||| ||||||||| Sbjct 20005 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTCTAGGGGCGA 20059 Score = 113 bits (124), Expect = 2e-22 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 18979 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 19038 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||| |||||||||||| ||||||| || | ||||| ||||||| | |||| | Sbjct 19039 ACCGGCACGAGACCGATAGCCAACAAGTACCTGTAAGGGAAAGTTGAAAAGAATTTTGAA 19098 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 19099 GAGAGAGTTCAAGAGGGCGTGAAA 19122 >seq602 Length=7965281 Score = 102 bits (112), Expect = 3e-19 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||||| || | |||||| |||||||||||||||||||||| || | |||| Sbjct 7874422 GAGCATGAGCATCCATGCTAGGACCCTAAAGATGGTGAACTATGCCTGAC-AGAGCGAAG 7874480 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||||||||||||| | || ||| | ||| | ||||||| | |||||| Sbjct 7874481 CCAGAGGAAACTCTGGTGGAAGTCCGTAGCCATCCTGACATGCAAATTGGTCGTCA 7874536 >seq372 Length=5512823 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| | Sbjct 4386941 AAAGATGGTGACCTATGCCTGGGCAGGGCGAAGCCAGAGGAACTTCTGGTGGAGGTCCAT 4386882 Query 636 AGCGGTTCTGGCGTGCAAAT 655 ||||| ||| | ||||||| Sbjct 4386881 AGCGGCCCTGACATGCAAAT 4386862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079890712250