Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1548 136 2e-29
seq602 102 3e-19
seq372 77.0 1e-11
>seq1548
Length=45218
Score = 136 bits (150), Expect = 2e-29
Identities = 99/115 (86%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 19945 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 20004
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || |||||| ||| ||||||||||| ||||| | |||| |||||||||
Sbjct 20005 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTCTAGGGGCGA 20059
Score = 113 bits (124), Expect = 2e-22
Identities = 112/144 (78%), Gaps = 1/144 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 18979 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 19038
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| ||| |||||||||||| ||||||| || | ||||| ||||||| | |||| |
Sbjct 19039 ACCGGCACGAGACCGATAGCCAACAAGTACCTGTAAGGGAAAGTTGAAAAGAATTTTGAA 19098
Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || |||||||
Sbjct 19099 GAGAGAGTTCAAGAGGGCGTGAAA 19122
>seq602
Length=7965281
Score = 102 bits (112), Expect = 3e-19
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||||| || | |||||| |||||||||||||||||||||| || | ||||
Sbjct 7874422 GAGCATGAGCATCCATGCTAGGACCCTAAAGATGGTGAACTATGCCTGAC-AGAGCGAAG 7874480
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664
|||||||||||||||||||| | || ||| | ||| | ||||||| | ||||||
Sbjct 7874481 CCAGAGGAAACTCTGGTGGAAGTCCGTAGCCATCCTGACATGCAAATTGGTCGTCA 7874536
>seq372
Length=5512823
Score = 77.0 bits (84), Expect = 1e-11
Identities = 65/80 (81%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635
||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| |
Sbjct 4386941 AAAGATGGTGACCTATGCCTGGGCAGGGCGAAGCCAGAGGAACTTCTGGTGGAGGTCCAT 4386882
Query 636 AGCGGTTCTGGCGTGCAAAT 655
||||| ||| | |||||||
Sbjct 4386881 AGCGGCCCTGACATGCAAAT 4386862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079890712250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |