Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq1548 167 1e-39 seq3858 71.6 6e-11 >seq1548 Length=45218 Score = 167 bits (184), Expect = 1e-39 Identities = 98/102 (96%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||| Sbjct 18758 GGAAAAGAAACTAACGAGAATTCCCTCAGTAACGGCGAGCGAAGAGGGAAGAGCCCAGCG 18817 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||||||||||||||||||||||||||||| Sbjct 18818 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 18859 >seq3858 Length=18945 Score = 71.6 bits (78), Expect = 6e-11 Identities = 87/112 (78%), Gaps = 15/112 (13%) Strand=Plus/Plus Query 5 AAGAAACTAACC-AGGATT-CCCTCA-GTAACGGCGAGTGAAC----AGGGAAGAG---- 53 || ||||||| | |||||| |||||| ||||||| || | | |||||| | Sbjct 10446 AAAAAACTAAACGAGGATTTCCCTCAAGTAACGGGCAGCGTATTTAGAGGGAAACGGGTC 10505 Query 54 -CCCAGCGCCGAAT--CCCCGCCCCG-CGGTGGGGCGCGGGACATGTGGCGT 101 |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 10506 CCCCAGCGCCGAAATCCCCCGCCCCGGCGGTGGGGCGCGGGACATGTGGCGT 10557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230388994800