Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3858 190 3e-46 seq259 96.9 6e-18 >seq3858 Length=18945 Score = 190 bits (210), Expect = 3e-46 Identities = 206/257 (80%), Gaps = 17/257 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACA-TCTAAGGGCATCACAGACCTGTT-ATTGC 72 |||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| Sbjct 5740 GTCAGTGTAGCGCGCGTGCGGCCCCGGACAATCTAAGGGCATCACAGACCTGTTTATTGC 5681 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAA-TAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 |||| || | |||||| | ||| | | |||||||||||||| | | || | | Sbjct 5680 -TCAATCT-CGGGTGGCTGAACGCCCACTTGTCCCTCTAAGAAGTTGGAC-CCGCCGCTC 5624 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG-AC 187 | | | | | ||| |||||| | || |||||||||||||||||||||||||| || Sbjct 5623 GGGGGTCGCGTAACTAGTTAGCATGCAGAG-TCTCGTTCGTTATCGGAATTAACCAGAAC 5565 Query 188 AAATCACTCCACCAACTAAG--AACGGCCATGCACCACCACCCA-TAGAAT-CAAGAAAG 243 ||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||| Sbjct 5564 AAATCGCTCCACCAACTAAGAAAACGGCCATGCACCACCACCCACGGGAATCCGAGAAAG 5505 Query 244 AG--CTATCAATCTGTC 258 || || |||||||||| Sbjct 5504 AGCTCTCTCAATCTGTC 5488 >seq259 Length=19574136 Score = 96.9 bits (106), Expect = 6e-18 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||||||||||||| |||||||||||||||| |||||||||||| ||| | ||||| Sbjct 3088676 AATTAACCAGACAAATTGCTCCACCAACTAAGAAAGGCCATGCACCATCACTAACAGAAT 3088735 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||| || |||||| Sbjct 3088736 TGAGAAAGAGCTCTCCCTCTGTC 3088758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796760671695