Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 190 3e-46
seq259 96.9 6e-18
>seq3858
Length=18945
Score = 190 bits (210), Expect = 3e-46
Identities = 206/257 (80%), Gaps = 17/257 (7%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACA-TCTAAGGGCATCACAGACCTGTT-ATTGC 72
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||
Sbjct 5740 GTCAGTGTAGCGCGCGTGCGGCCCCGGACAATCTAAGGGCATCACAGACCTGTTTATTGC 5681
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAA-TAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131
|||| || | |||||| | ||| | | |||||||||||||| | | || | |
Sbjct 5680 -TCAATCT-CGGGTGGCTGAACGCCCACTTGTCCCTCTAAGAAGTTGGAC-CCGCCGCTC 5624
Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG-AC 187
| | | | | ||| |||||| | || |||||||||||||||||||||||||| ||
Sbjct 5623 GGGGGTCGCGTAACTAGTTAGCATGCAGAG-TCTCGTTCGTTATCGGAATTAACCAGAAC 5565
Query 188 AAATCACTCCACCAACTAAG--AACGGCCATGCACCACCACCCA-TAGAAT-CAAGAAAG 243
||||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||
Sbjct 5564 AAATCGCTCCACCAACTAAGAAAACGGCCATGCACCACCACCCACGGGAATCCGAGAAAG 5505
Query 244 AG--CTATCAATCTGTC 258
|| || ||||||||||
Sbjct 5504 AGCTCTCTCAATCTGTC 5488
>seq259
Length=19574136
Score = 96.9 bits (106), Expect = 6e-18
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235
|||||||||||||||| |||||||||||||||| |||||||||||| ||| | |||||
Sbjct 3088676 AATTAACCAGACAAATTGCTCCACCAACTAAGAAAGGCCATGCACCATCACTAACAGAAT 3088735
Query 236 CAAGAAAGAGCTATCAATCTGTC 258
|||||||||| || ||||||
Sbjct 3088736 TGAGAAAGAGCTCTCCCTCTGTC 3088758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796760671695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |