Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4689 264 2e-68 seq107 237 3e-60 seq659 140 6e-31 seq1548 118 2e-24 seq846 98.7 2e-18 >seq4689 Length=21225 Score = 264 bits (292), Expect = 2e-68 Identities = 210/245 (86%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 20956 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 21015 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||| |||||||||||||||| ||||||||||||||||||| | Sbjct 21016 ACGACGGTCTAAACCCAGTACACGTTCCCTATTAGT-GGTGAACAATCCAACGCTTGGTG 21074 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG-ATCAAAAAGCAACGTCGCT 178 ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 21075 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAATCAAAAAGCGACGTCGCT 21134 Query 179 ATGAACGCTTGGC---TG--CCACAAGCCAGT----TATCCCTGTGGTAACTTTTCTGGC 229 ||||||||||||| || ||| |||||||| |||||| ||||||||||||||| | Sbjct 21135 ATGAACGCTTGGCCCTTGCTCCAAAAGCCAGTTTTATATCCC-GTGGTAACTTTTCTGAC 21193 Query 230 ACCTC 234 ||||| Sbjct 21194 ACCTC 21198 >seq107 Length=308634 Score = 237 bits (262), Expect = 3e-60 Identities = 188/213 (88%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA-CCCAGCTCACGTTCCCT 89 |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| Sbjct 42390 TCATCAGTAGGGTAAAACTAACCTGTCTCACGTACGTCTAAACCCCAGCTCACGTTCCCT 42449 Query 90 ATTAGTGG--GTGAACAATCCAACGCTTAC--CGAATTCTGCTTCGGTATGATAGGAAG- 144 |||||||| ||||||||| |||||||| | |||||||||||| ||||||||||| Sbjct 42450 ATTAGTGGAAGTGAACAAT-CAACGCTTGCGTTGAATTCTGCTTCACAATGATAGGAAGC 42508 Query 145 AGCCGACATCGAAGGATC-AAAAAGC-AACGTCGCTATG-AACGCTTGGCTGCCACAAGC 201 |||||||| ||||| || ||||||| |||||||||||| |||||||||| |||||||| Sbjct 42509 AGCCGACA-CGAAGATTCAAAAAAGCGAACGTCGCTATGAAACGCTTGGCCGCCACAAG- 42566 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||||||||||| |||||| Sbjct 42567 CAGTTATCCCTGTGGTAACTTTTCTGACACCTC 42599 >seq659 Length=1645663 Score = 140 bits (154), Expect = 6e-31 Identities = 133/168 (79%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||| |||||||||| | |||| | | || ||| |||||||| |||| |||||||| Sbjct 1527868 TCTAATCCCAGCTCACATCCCCTCTCACAGG-TGAGCAATCCAATGCTT---GAATTCTG 1527813 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||| ||| ||| ||||||| | || |||| ||||||||| | | ||||||| | | Sbjct 1527812 CTTCCCAATGGTAGCAAGAGCCAAGATGAAAGGCTCAAAAAGCCATGCTGCTATGAGCAC 1527753 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||||| |||| |||||||||| ||| |||||| Sbjct 1527752 TTGGCTGCCACAAGCCAGTCCCCCCTATGGTAACTTTCCTGACACCTC 1527705 >seq1548 Length=45218 Score = 118 bits (130), Expect = 2e-24 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCT-ATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||| |||||||||||| | ||| || ||||||||| | | |||||||||||||||||| Sbjct 26406 ATCGAGGGATCAAAAAGCGATGTCACTTATGAACGCTGGCCGGCCACAAGCCAGTTATCC 26347 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| |||||| || | ||| | | | ||||||| ||| Sbjct 26346 CTGTGGTAACTTTTCTCACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCATGAGG 26287 Query 271 CCACACTTTCATGGTTTGTATT 292 || |||||||| ||| |||||| Sbjct 26286 CCCCACTTTCACGGTCTGTATT 26265 >seq846 Length=46237 Score = 98.7 bits (108), Expect = 2e-18 Identities = 73/83 (88%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||| |||||||||||| | || ||||||||||||||| ||||||||||||||||||| Sbjct 894 ATCGAGGGATCAAAAAGCGAA-TCACTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 836 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||| |||||| Sbjct 835 --TGGTAACTTTTCTCACACCTC 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854356468320