Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq4689 264 2e-68
seq107 237 3e-60
seq659 140 6e-31
seq1548 118 2e-24
seq846 98.7 2e-18
>seq4689
Length=21225
Score = 264 bits (292), Expect = 2e-68
Identities = 210/245 (86%), Gaps = 13/245 (5%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 20956 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 21015
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 21016 ACGACGGTCTAAACCCAGTACACGTTCCCTATTAGT-GGTGAACAATCCAACGCTTGGTG 21074
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG-ATCAAAAAGCAACGTCGCT 178
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 21075 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAATCAAAAAGCGACGTCGCT 21134
Query 179 ATGAACGCTTGGC---TG--CCACAAGCCAGT----TATCCCTGTGGTAACTTTTCTGGC 229
||||||||||||| || ||| |||||||| |||||| ||||||||||||||| |
Sbjct 21135 ATGAACGCTTGGCCCTTGCTCCAAAAGCCAGTTTTATATCCC-GTGGTAACTTTTCTGAC 21193
Query 230 ACCTC 234
|||||
Sbjct 21194 ACCTC 21198
>seq107
Length=308634
Score = 237 bits (262), Expect = 3e-60
Identities = 188/213 (88%), Gaps = 12/213 (6%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA-CCCAGCTCACGTTCCCT 89
|||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct 42390 TCATCAGTAGGGTAAAACTAACCTGTCTCACGTACGTCTAAACCCCAGCTCACGTTCCCT 42449
Query 90 ATTAGTGG--GTGAACAATCCAACGCTTAC--CGAATTCTGCTTCGGTATGATAGGAAG- 144
|||||||| ||||||||| |||||||| | |||||||||||| |||||||||||
Sbjct 42450 ATTAGTGGAAGTGAACAAT-CAACGCTTGCGTTGAATTCTGCTTCACAATGATAGGAAGC 42508
Query 145 AGCCGACATCGAAGGATC-AAAAAGC-AACGTCGCTATG-AACGCTTGGCTGCCACAAGC 201
|||||||| ||||| || ||||||| |||||||||||| |||||||||| ||||||||
Sbjct 42509 AGCCGACA-CGAAGATTCAAAAAAGCGAACGTCGCTATGAAACGCTTGGCCGCCACAAG- 42566
Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||||||||||||||||| ||||||
Sbjct 42567 CAGTTATCCCTGTGGTAACTTTTCTGACACCTC 42599
>seq659
Length=1645663
Score = 140 bits (154), Expect = 6e-31
Identities = 133/168 (79%), Gaps = 4/168 (2%)
Strand=Plus/Minus
Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126
||||| |||||||||| | |||| | | || ||| |||||||| |||| ||||||||
Sbjct 1527868 TCTAATCCCAGCTCACATCCCCTCTCACAGG-TGAGCAATCCAATGCTT---GAATTCTG 1527813
Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186
|||| ||| ||| ||||||| | || |||| ||||||||| | | ||||||| | |
Sbjct 1527812 CTTCCCAATGGTAGCAAGAGCCAAGATGAAAGGCTCAAAAAGCCATGCTGCTATGAGCAC 1527753
Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||||||||||||||||||| |||| |||||||||| ||| ||||||
Sbjct 1527752 TTGGCTGCCACAAGCCAGTCCCCCCTATGGTAACTTTCCTGACACCTC 1527705
>seq1548
Length=45218
Score = 118 bits (130), Expect = 2e-24
Identities = 112/142 (79%), Gaps = 1/142 (1%)
Strand=Plus/Minus
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCT-ATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||| |||||||||||| | ||| || ||||||||| | | ||||||||||||||||||
Sbjct 26406 ATCGAGGGATCAAAAAGCGATGTCACTTATGAACGCTGGCCGGCCACAAGCCAGTTATCC 26347
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
|||||||||||||||| |||||| || | ||| | | | ||||||| |||
Sbjct 26346 CTGTGGTAACTTTTCTCACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCATGAGG 26287
Query 271 CCACACTTTCATGGTTTGTATT 292
|| |||||||| ||| ||||||
Sbjct 26286 CCCCACTTTCACGGTCTGTATT 26265
>seq846
Length=46237
Score = 98.7 bits (108), Expect = 2e-18
Identities = 73/83 (88%), Gaps = 3/83 (4%)
Strand=Plus/Minus
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
||||| |||||||||||| | || ||||||||||||||| |||||||||||||||||||
Sbjct 894 ATCGAGGGATCAAAAAGCGAA-TCACTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 836
Query 212 TGTGGTAACTTTTCTGGCACCTC 234
||||||||||||| ||||||
Sbjct 835 --TGGTAACTTTTCTCACACCTC 815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854356468320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |