Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3858 82.4 8e-14 >seq3858 Length=18945 Score = 82.4 bits (90), Expect = 8e-14 Identities = 128/178 (72%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC-TTTGCTCGAATACATTACCATGG 71 |||||||||| ||||| |||| |||||||||||||| || | |||| | | || Sbjct 4994 TTTACTTTGAGAAAAT-AGAGTGTTCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGG 5052 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA----CCGCCCGTAAT 127 |||||| ||||||||| | |||||||||||||| ||||| ||| |||| || Sbjct 5053 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGGAAACGGGGCCC---AT 5108 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 5109 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511974728800