Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3858 145 1e-32 >seq3858 Length=18945 Score = 145 bits (160), Expect = 1e-32 Identities = 210/280 (75%), Gaps = 15/280 (5%) Strand=Plus/Plus Query 59 GGCGGGTCGCCGGCTTCTTAGAGGGACTA-TCGGC-TCAAGCCGATGGAAGTTTGAGGCA 116 |||||||| | |||||||||||||| | | ||| | |||| || | ||||| || Sbjct 5628 GGCGGGTC--CAACTTCTTAGAGGGACAAGTGGGCGTTCAGCCACCCGA-GATTGAG-CA 5683 Query 117 ATAA-CAGGTCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||| | Sbjct 5684 ATAAACAGGTCTGTGATGCCCTTAGATTGTCCGGGGCCGCACGCGCGCTACACTGACTGG 5743 Query 175 GCCAAC-GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || | || | | ||| ||||| ||| |||||| | | || | | ||||| Sbjct 5744 CTCAGCTTGGTGCCTACCCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTG 5803 Query 234 CTGGGGATAGAGCATTGCAAT-TATT-GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 ||||||| | | |||||||| | || | | | |||||||||| || ||| || ||| | Sbjct 5804 ATGGGGATCGGGGATTGCAATATCTTCCCCCGTGAACGAGGAATTCCCAGT-AGTGCGGG 5862 Query 292 TCATCAGCACGCG--TTGATT-ACGTCCCTGCCCTTTGTA 328 |||| ||| |||| |||||| | |||||||||||||||| Sbjct 5863 TCATAAGCTCGCGGATTGATTAAGGTCCCTGCCCTTTGTA 5902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947151740160