Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 145 1e-32
>seq3858
Length=18945
Score = 145 bits (160), Expect = 1e-32
Identities = 210/280 (75%), Gaps = 15/280 (5%)
Strand=Plus/Plus
Query 59 GGCGGGTCGCCGGCTTCTTAGAGGGACTA-TCGGC-TCAAGCCGATGGAAGTTTGAGGCA 116
|||||||| | |||||||||||||| | | ||| | |||| || | ||||| ||
Sbjct 5628 GGCGGGTC--CAACTTCTTAGAGGGACAAGTGGGCGTTCAGCCACCCGA-GATTGAG-CA 5683
Query 117 ATAA-CAGGTCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174
|||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||| |
Sbjct 5684 ATAAACAGGTCTGTGATGCCCTTAGATTGTCCGGGGCCGCACGCGCGCTACACTGACTGG 5743
Query 175 GCCAAC-GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
|| | || | | ||| ||||| ||| |||||| | | || | | |||||
Sbjct 5744 CTCAGCTTGGTGCCTACCCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTG 5803
Query 234 CTGGGGATAGAGCATTGCAAT-TATT-GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291
||||||| | | |||||||| | || | | | |||||||||| || ||| || ||| |
Sbjct 5804 ATGGGGATCGGGGATTGCAATATCTTCCCCCGTGAACGAGGAATTCCCAGT-AGTGCGGG 5862
Query 292 TCATCAGCACGCG--TTGATT-ACGTCCCTGCCCTTTGTA 328
|||| ||| |||| |||||| | ||||||||||||||||
Sbjct 5863 TCATAAGCTCGCGGATTGATTAAGGTCCCTGCCCTTTGTA 5902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947151740160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |