Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 291 3e-76
seq107 279 2e-72
seq1548 268 3e-69
seq2824 159 1e-36
seq238 158 4e-36
seq551 89.7 2e-15
>seq3858
Length=18945
Score = 291 bits (322), Expect = 3e-76
Identities = 188/205 (92%), Gaps = 7/205 (3%)
Strand=Plus/Minus
Query 234 CGGCTCCCACTTATTCTAC------ACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
|||| |||||||||||||| |||||||| ||| |||||| | | |||||||||
Sbjct 18770 CGGC-CCCACTTATTCTACCACTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGT 18712
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18711 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 18652
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 18651 TTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACT 18592
Query 408 AATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||
Sbjct 18591 AATTAGATGACGAGGCATTTGGCTA 18567
Score = 168 bits (186), Expect = 2e-39
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 13905 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 13846
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 13845 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 13805
>seq107
Length=308634
Score = 279 bits (308), Expect = 2e-72
Identities = 259/307 (84%), Gaps = 24/307 (8%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||| ||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 43037 CTCCCACTTAATCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 43096
Query 297 CAGGGTCTTCTTTCCCCGCTGAT-TCCGCCAAGCCCGTTCCCTTGGCTGTG-GTTTCGCT 354
|| |||||||||| ||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 43097 CA-GGTCTTCTTT-CCCGCTGATCGCCCACAAGCCCGTTCCCT--GCTGTGCGTTTCGCT 43152
Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA-TTCAT---GCGCGTCACTAAT 410
|||||||| | ||||||| ||||||| ||| ||||| ||||| |||||||||||
Sbjct 43153 GGATAGTAGGT--GGACAGT-GGAATCT-GTTCATCCATTTCATAAAAAGCGTCACTAAT 43208
Query 411 TAGATGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469
|||||||| ||||| ||||||||| ||||||||||||| ||||||||| |||||||
Sbjct 43209 TAGATGAC-AGGCATTTTGGCTACGCTAAGAGAGTCATAAGTACTCCCGC--GTTACCCG 43265
Query 470 CG--CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC- 526
|| ||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 43266 CGGCCTTCATTGAA-TTCTTCAC-TTGACATTCAGAGCACT-GGCAGAAATCACATCGCT 43322
Query 527 GTCAACA 533
|||||||
Sbjct 43323 GTCAACA 43329
>seq1548
Length=45218
Score = 268 bits (296), Expect = 3e-69
Identities = 177/196 (90%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| ||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 25945 CTACCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 25886
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||| |
Sbjct 25885 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTTGCTGG 25826
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||| ||||||| ||| |||||| ||||||| ||||||||||||||
Sbjct 25825 ATAGTAGGTAGGGACAGTTGGAATCTTGTTCATCCATCCATGCGCATCACTAATTAGATG 25766
Query 417 ACGAGGCATTTGGCTA 432
||||||||||||||||
Sbjct 25765 ACGAGGCATTTGGCTA 25750
Score = 100 bits (110), Expect = 9e-19
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21692 GTTTACCCATGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 21633
Query 521 CATTGCGTCAACA 533
||| | ||| |||
Sbjct 21632 CATCGTGTCCACA 21620
Score = 91.5 bits (100), Expect = 5e-16
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| |
Sbjct 26230 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 26171
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104
||| |||| || | ||||||| ||||||||||||||
Sbjct 26170 CTTTGACAGGTGAACTGCCCCAGTCAAACTCCCCACCT 26133
>seq2824
Length=27487
Score = 159 bits (176), Expect = 1e-36
Identities = 125/149 (84%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||||||||||||| || |||||||| |||||||| |||||||||||| ||
Sbjct 18923 CAGGCTCAACAGGGTCTTCTTCCCTTGCTGATTCTGCCAAGCCTGTTCCCTTGGCTATGT 18982
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403
|||| || |||||||| |||| || |||||||||| ||| || | |||||| | ||
Sbjct 18983 TTTCACTGGATAGTAGGTAGGAACTGTGGGAATCTTGTTCATTCATTTATTCATTCATGT 19042
Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||| ||||||||||||||
Sbjct 19043 CACTAATTAGATGATGAGGCATTTGGCTA 19071
>seq238
Length=419873
Score = 158 bits (174), Expect = 4e-36
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392
|||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 52797 TTCCGTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA 52856
Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||| |||||||||||||||||||||||||||||||||
Sbjct 52857 TTCATGTGCGTCACTAATTAGATGACGAGGCATTTGGCTA 52896
Score = 95.1 bits (104), Expect = 4e-17
Identities = 89/103 (86%), Gaps = 9/103 (9%)
Strand=Plus/Plus
Query 335 CCCTTGGCT-GTGGTTT-CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA-ATCC 391
||||||||| ||||||| |||| ||||| || |||| | |||| ||||||||| ||||
Sbjct 46169 CCCTTGGCTTGTGGTTTTCGCTGGATAGAAG-TAGGAA--GTGG-AATCTCGTTGCATCC 46224
Query 392 ATTCATGC-GCGTCA-CTAATTAGATGACGAGGCATTTGGCTA 432
||||||| |||||| |||||||||||||||||||||||||||
Sbjct 46225 ATTCATGTTGCGTCAGCTAATTAGATGACGAGGCATTTGGCTA 46267
>seq551
Length=26685066
Score = 89.7 bits (98), Expect = 2e-15
Identities = 82/101 (81%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||| || || || |||||| || | ||| || || ||||||||||||||||
Sbjct 21659463 CTTAAGAGAATCCTAWGTCACTCCCACCATCTACT-GCATTTCATTGAATTTCTTCACTT 21659405
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||| || ||||| ||||||||||||| |||||
Sbjct 21659404 TGACATTCAGGGCYCTGGGATGAAATCACATTGCAGCAACA 21659364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635116686560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |