Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3858 291 3e-76 seq107 279 2e-72 seq1548 268 3e-69 seq2824 159 1e-36 seq238 158 4e-36 seq551 89.7 2e-15 >seq3858 Length=18945 Score = 291 bits (322), Expect = 3e-76 Identities = 188/205 (92%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTAC------ACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 |||| |||||||||||||| |||||||| ||| |||||| | | ||||||||| Sbjct 18770 CGGC-CCCACTTATTCTACCACTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGT 18712 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18711 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 18652 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 18651 TTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACT 18592 Query 408 AATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||| Sbjct 18591 AATTAGATGACGAGGCATTTGGCTA 18567 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 13905 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 13846 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 13845 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 13805 >seq107 Length=308634 Score = 279 bits (308), Expect = 2e-72 Identities = 259/307 (84%), Gaps = 24/307 (8%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 43037 CTCCCACTTAATCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 43096 Query 297 CAGGGTCTTCTTTCCCCGCTGAT-TCCGCCAAGCCCGTTCCCTTGGCTGTG-GTTTCGCT 354 || |||||||||| ||||||||| || |||||||||||||| |||||| |||||||| Sbjct 43097 CA-GGTCTTCTTT-CCCGCTGATCGCCCACAAGCCCGTTCCCT--GCTGTGCGTTTCGCT 43152 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA-TTCAT---GCGCGTCACTAAT 410 |||||||| | ||||||| ||||||| ||| ||||| ||||| ||||||||||| Sbjct 43153 GGATAGTAGGT--GGACAGT-GGAATCT-GTTCATCCATTTCATAAAAAGCGTCACTAAT 43208 Query 411 TAGATGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||| ||||| ||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 43209 TAGATGAC-AGGCATTTTGGCTACGCTAAGAGAGTCATAAGTACTCCCGC--GTTACCCG 43265 Query 470 CG--CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC- 526 || ||| ||||| |||||||| ||||||||||||||||| |||||||||||||| || Sbjct 43266 CGGCCTTCATTGAA-TTCTTCAC-TTGACATTCAGAGCACT-GGCAGAAATCACATCGCT 43322 Query 527 GTCAACA 533 ||||||| Sbjct 43323 GTCAACA 43329 >seq1548 Length=45218 Score = 268 bits (296), Expect = 3e-69 Identities = 177/196 (90%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 25945 CTACCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 25886 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||| | Sbjct 25885 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCCTTCCCTTGGCTGTGGTTTTGCTGG 25826 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||| ||||||| ||| |||||| ||||||| |||||||||||||| Sbjct 25825 ATAGTAGGTAGGGACAGTTGGAATCTTGTTCATCCATCCATGCGCATCACTAATTAGATG 25766 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 25765 ACGAGGCATTTGGCTA 25750 Score = 100 bits (110), Expect = 9e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 21692 GTTTACCCATGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 21633 Query 521 CATTGCGTCAACA 533 ||| | ||| ||| Sbjct 21632 CATCGTGTCCACA 21620 Score = 91.5 bits (100), Expect = 5e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 26230 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 26171 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||| |||| || | ||||||| |||||||||||||| Sbjct 26170 CTTTGACAGGTGAACTGCCCCAGTCAAACTCCCCACCT 26133 >seq2824 Length=27487 Score = 159 bits (176), Expect = 1e-36 Identities = 125/149 (84%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||||||||||||| || |||||||| |||||||| |||||||||||| || Sbjct 18923 CAGGCTCAACAGGGTCTTCTTCCCTTGCTGATTCTGCCAAGCCTGTTCCCTTGGCTATGT 18982 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403 |||| || |||||||| |||| || |||||||||| ||| || | |||||| | || Sbjct 18983 TTTCACTGGATAGTAGGTAGGAACTGTGGGAATCTTGTTCATTCATTTATTCATTCATGT 19042 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||| |||||||||||||| Sbjct 19043 CACTAATTAGATGATGAGGCATTTGGCTA 19071 >seq238 Length=419873 Score = 158 bits (174), Expect = 4e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||| ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| Sbjct 52797 TTCCGTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA 52856 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||| ||||||||||||||||||||||||||||||||| Sbjct 52857 TTCATGTGCGTCACTAATTAGATGACGAGGCATTTGGCTA 52896 Score = 95.1 bits (104), Expect = 4e-17 Identities = 89/103 (86%), Gaps = 9/103 (9%) Strand=Plus/Plus Query 335 CCCTTGGCT-GTGGTTT-CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA-ATCC 391 ||||||||| ||||||| |||| ||||| || |||| | |||| ||||||||| |||| Sbjct 46169 CCCTTGGCTTGTGGTTTTCGCTGGATAGAAG-TAGGAA--GTGG-AATCTCGTTGCATCC 46224 Query 392 ATTCATGC-GCGTCA-CTAATTAGATGACGAGGCATTTGGCTA 432 ||||||| |||||| ||||||||||||||||||||||||||| Sbjct 46225 ATTCATGTTGCGTCAGCTAATTAGATGACGAGGCATTTGGCTA 46267 >seq551 Length=26685066 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||| || || || |||||| || | ||| || || |||||||||||||||| Sbjct 21659463 CTTAAGAGAATCCTAWGTCACTCCCACCATCTACT-GCATTTCATTGAATTTCTTCACTT 21659405 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| || ||||| ||||||||||||| ||||| Sbjct 21659404 TGACATTCAGGGCYCTGGGATGAAATCACATTGCAGCAACA 21659364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635116686560