Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3858 381 2e-103 >seq3858 Length=18945 Score = 381 bits (422), Expect = 2e-103 Identities = 406/517 (79%), Gaps = 23/517 (4%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC-TCC 62 ||||||||||||||| | | | |||||| ||||||| ||||| | ||||||||| ||| Sbjct 4759 CTCATTCCAATTACAGGGCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCCTCC 4700 Query 63 CCGTGTCGGGATTGGGTAATTTGCG-CGCCTGC-TGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct 4699 CCGGGTCGGGAGTGGGTAATTTGCGGCGCCTGCCTGCCT-CCTTGGATGTGGTAGCCGTT 4641 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGT 179 |||||||||||||||||||||||||||||| ||||||||| |||||| | | |||||||| Sbjct 4640 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTTCACCATGGT 4581 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||| |||||| ||| ||||| | |||||| | Sbjct 4580 AGGCACAGACAGTACCATCGAAAGTTGATTAGGCAGACATTCGAATGGGTCGTCGCCGCC 4521 Query 240 TC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC-- 294 | ||| |||||| | | | ||||| || ||||||| | || | |||| Sbjct 4520 GCGGGGGCGGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCC 4461 Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTA 350 ||||| |||| ||| |||||| ||| | | || || |||| | | | ||||||| Sbjct 4460 GGGTTGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGCGCTCGTCGGCATGTA 4402 Query 351 TTAGCTCTAGAA-TTACCAC-GGTTATCCATG---TAGTAAGGTACTATC-AAATAAACG 404 |||||||||||| ||||||| |||||||| | | ||| | | | ||| ||| Sbjct 4401 TTAGCTCTAGAATTTACCACAAGTTATCCAAGAGCGGGAGAGGAGCGACCAAAAGGAACC 4342 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | |||||||||||| Sbjct 4341 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATG 4282 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 |||||||||| ||||||||||||| |||| ||||||| Sbjct 4281 CATGGCTTAAGCTTTGAGACAAGC-TATG-CTACTGG 4247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510323045120