Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 381 2e-103
>seq3858
Length=18945
Score = 381 bits (422), Expect = 2e-103
Identities = 406/517 (79%), Gaps = 23/517 (4%)
Strand=Plus/Minus
Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC-TCC 62
||||||||||||||| | | | |||||| ||||||| ||||| | ||||||||| |||
Sbjct 4759 CTCATTCCAATTACAGGGCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCCTCC 4700
Query 63 CCGTGTCGGGATTGGGTAATTTGCG-CGCCTGC-TGCCTTCCTTGGATGTGGTAGCCGTT 120
||| ||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 4699 CCGGGTCGGGAGTGGGTAATTTGCGGCGCCTGCCTGCCT-CCTTGGATGTGGTAGCCGTT 4641
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGT 179
|||||||||||||||||||||||||||||| ||||||||| |||||| | | ||||||||
Sbjct 4640 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTTCACCATGGT 4581
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
|||| | ||||||||||||||||| |||||| ||| ||||| | |||||| |
Sbjct 4580 AGGCACAGACAGTACCATCGAAAGTTGATTAGGCAGACATTCGAATGGGTCGTCGCCGCC 4521
Query 240 TC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC-- 294
| ||| |||||| | | | ||||| || ||||||| | || | ||||
Sbjct 4520 GCGGGGGCGGTGCGATCGGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCC 4461
Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTA 350
||||| |||| ||| |||||| ||| | | || || |||| | | | |||||||
Sbjct 4460 GGGTTGG-TTTTGGTCTGATAAATGCACGCGTCCCCGGAGGTCGCGCTCGTCGGCATGTA 4402
Query 351 TTAGCTCTAGAA-TTACCAC-GGTTATCCATG---TAGTAAGGTACTATC-AAATAAACG 404
|||||||||||| ||||||| |||||||| | | ||| | | | ||| |||
Sbjct 4401 TTAGCTCTAGAATTTACCACAAGTTATCCAAGAGCGGGAGAGGAGCGACCAAAAGGAACC 4342
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||||||||||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 4341 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATG 4282
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501
|||||||||| ||||||||||||| |||| |||||||
Sbjct 4281 CATGGCTTAAGCTTTGAGACAAGC-TATG-CTACTGG 4247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510323045120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |