Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq319 96.9 3e-15 seq113 95.1 1e-14 >seq1 Length=1900206 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 1361579 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1361638 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| ||||| || Sbjct 1361639 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 1361698 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 1361699 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 1361738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 1362833 CATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTTT 1362892 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 1362893 CCCTGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 1362951 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 1362952 AGATGGCAAA--AGCCC 1362966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 65657 CTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG 65716 ||| |||| || || || | | ||||| |||| |||| |||| || | ||||||| Sbjct 1358802 CTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTG 1358861 Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776 | ||| || || | | || ||||||||||| ||| | | || || | |||| Sbjct 1358862 GCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGAGCTGAGCCTGG 1358921 Query 65777 TCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATA 65836 |||||||| | || | | |||||||| || | ||| ||||| || || || ||||| Sbjct 1358922 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATG 1358981 Query 65837 CCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAG 65882 |||||||| || || ||| ||||| || ||| |||| || |||| Sbjct 1358982 CCGATGGGCCGGTGCCGCCGGTTGGAGCG-CTCGGCCTGCGGGACAG 1359027 >seq319 Length=32890058 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||| | |||| || || |||||||| |||||||||| Sbjct 31273925 TGGAGCGGTTCAGTCAAGAAGTGCAAATCACGGAAGCTCGCTGTTTCTATGGCTTCCAGA 31273984 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| | ||||| || || ||||| | || Sbjct 31273985 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTCCTCATTGACACCTACATTAAGG 31274044 Query 61376 A 61376 | Sbjct 31274045 A 31274045 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 31273103 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 31273162 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 31273163 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 31273200 >seq113 Length=61408302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 43797544 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 43797603 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||| ||| Sbjct 43797604 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACYTCA 43797660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397543312890800