Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1680 192 1e-46
seq2033 178 2e-42
seq1907 104 4e-20
seq1894 91.5 3e-16
>seq1680
Length=1114612
Score = 192 bits (212), Expect = 1e-46
Identities = 172/215 (80%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||| |||| ||| ||||| ||||||||| |||||||| ||||| | |||||| |
Sbjct 948923 TCATCAGCCGGGTGAAAGTAACCCATCTCATGACAGTCTAAACTCAGCTTATGTTCCCCA 948864
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| ||| || ||||| ||||| |||| |||||||||||| |||||| || ||||||
Sbjct 948863 TCAGTAGGCGAACAGTCCAATGCTTGGTGAATTCTGCTTCACCGTGATAGCAACAGCCGA 948804
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
| || ||||||||||||||||| || | | ||| ||||||||||||||||||||| |||
Sbjct 948803 CCTCAAAGGATCAAAAAGCAACATCCC--TTAACACTTGGCTGCCACAAGCCAGTTTTCC 948746
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245
|||||| ||| | |||| | |||| || | ||||
Sbjct 948745 CTGTGGCAACCTCTCTGACGCCTCCTGCTTAAAAT 948711
>seq2033
Length=1011527
Score = 178 bits (196), Expect = 2e-42
Identities = 165/207 (80%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| ||| ||||| | |||||| || |||||| ||| |||| |||||||||
Sbjct 34527 TCATCAGTAGGTTAACACTAATCCGTCTCACGATGGTCTAGACCTCGCTCCCGTTCCCTA 34468
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||| | |||||||| |||| |||||||||||| || |||||||||| |
Sbjct 34467 TTAGTGGGGGCGCAATCCAAGGCTTGGTGAATTCTGCTTCACAGTGGCAGGAAGAGCCAA 34408
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT-GCCA--CAAGCCAGTTA 207
|| ||||||||||| ||||| | |||||||||||||| | | || ||||||||||
Sbjct 34407 TATGGAAGGATCAAACAGCAATGGTGCTATGAACGCTTGCTTAGTCATCAAAGCCAGTTA 34348
Query 208 TCCCTGTGGTAACTTTTCTGGCACCTC 234
|| || |||||||||||| | |||||
Sbjct 34347 TCTCTTTGGTAACTTTTCCGAGACCTC 34321
>seq1907
Length=2632912
Score = 104 bits (114), Expect = 4e-20
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| |||||||||||||| |||| ||| | ||| |||||| ||||| | | ||| || |
Sbjct 1200096 TCATTAGTAGGGTAAAACTGACCTATCTAAAGACCGTCTAAGCCCAGATTATGTTTCCCA 1200037
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC--GGTATGATAGGAAGAGCC 148
|| || ||||| || | ||||||| ||| |||| ||||||||||||
Sbjct 1200036 CCGTCTGGCAGACTGTCCAAAGCCTGGTGAATTCTCCTTTATGGTA--ATAGGAAGAGCC 1199979
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
| ||| ||||||| |||| | || ||||||| || | | |||||||||||||
Sbjct 1199978 AATATCAAAGGATCGGAAAGAGATATCACTATGAATACTCAGACTCTACAAGCCAGTTAT 1199919
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246
| |||| ||||| ||||| | ||| || | |||||
Sbjct 1199918 CATTGTGATAACTCTTCTGATAACTCCTGCTTAAAATT 1199881
>seq1894
Length=1134425
Score = 91.5 bits (100), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||| ||| ||||||| || |||| ||| | | || |||||| ||| |||| ||
Sbjct 544096 TCATCAGGAGGATAAAACTGAC-TGTCCTATGGCAGCCTGAACCCAACTCGTGTTCACTG 544154
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||| || |||| | || ||||||||||| | |||||| | | |
Sbjct 544155 TTAGTGGGTGAGCAGTCCAGCATTTGTTGAATTCTGCTTTAGAGCGATAGGCAACAACAA 544214
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|| | |||| | || |||| | | || | || ||||||| || | ||||| ||
Sbjct 544215 CAGCAAAGG-TAGTGAAACAACTTTATTCTG--CTCTGGGCTGCCGCAGGGCAGTTTTCT 544271
Query 211 CTGTGGTAACTTTTCTGGCACCT 233
|| |||||||||||||| || ||
Sbjct 544272 CTATGGTAACTTTTCTGCCATCT 544294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854340918240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |