Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1680 192 1e-46 seq2033 178 2e-42 seq1907 104 4e-20 seq1894 91.5 3e-16 >seq1680 Length=1114612 Score = 192 bits (212), Expect = 1e-46 Identities = 172/215 (80%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||| ||| ||||| ||||||||| |||||||| ||||| | |||||| | Sbjct 948923 TCATCAGCCGGGTGAAAGTAACCCATCTCATGACAGTCTAAACTCAGCTTATGTTCCCCA 948864 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | ||| || ||||| ||||| |||| |||||||||||| |||||| || |||||| Sbjct 948863 TCAGTAGGCGAACAGTCCAATGCTTGGTGAATTCTGCTTCACCGTGATAGCAACAGCCGA 948804 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | || ||||||||||||||||| || | | ||| ||||||||||||||||||||| ||| Sbjct 948803 CCTCAAAGGATCAAAAAGCAACATCCC--TTAACACTTGGCTGCCACAAGCCAGTTTTCC 948746 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||| ||| | |||| | |||| || | |||| Sbjct 948745 CTGTGGCAACCTCTCTGACGCCTCCTGCTTAAAAT 948711 >seq2033 Length=1011527 Score = 178 bits (196), Expect = 2e-42 Identities = 165/207 (80%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||| ||||| | |||||| || |||||| ||| |||| ||||||||| Sbjct 34527 TCATCAGTAGGTTAACACTAATCCGTCTCACGATGGTCTAGACCTCGCTCCCGTTCCCTA 34468 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| | |||||||| |||| |||||||||||| || |||||||||| | Sbjct 34467 TTAGTGGGGGCGCAATCCAAGGCTTGGTGAATTCTGCTTCACAGTGGCAGGAAGAGCCAA 34408 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT-GCCA--CAAGCCAGTTA 207 || ||||||||||| ||||| | |||||||||||||| | | || |||||||||| Sbjct 34407 TATGGAAGGATCAAACAGCAATGGTGCTATGAACGCTTGCTTAGTCATCAAAGCCAGTTA 34348 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTC 234 || || |||||||||||| | ||||| Sbjct 34347 TCTCTTTGGTAACTTTTCCGAGACCTC 34321 >seq1907 Length=2632912 Score = 104 bits (114), Expect = 4e-20 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||| |||| ||| | ||| |||||| ||||| | | ||| || | Sbjct 1200096 TCATTAGTAGGGTAAAACTGACCTATCTAAAGACCGTCTAAGCCCAGATTATGTTTCCCA 1200037 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC--GGTATGATAGGAAGAGCC 148 || || ||||| || | ||||||| ||| |||| |||||||||||| Sbjct 1200036 CCGTCTGGCAGACTGTCCAAAGCCTGGTGAATTCTCCTTTATGGTA--ATAGGAAGAGCC 1199979 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 | ||| ||||||| |||| | || ||||||| || | | ||||||||||||| Sbjct 1199978 AATATCAAAGGATCGGAAAGAGATATCACTATGAATACTCAGACTCTACAAGCCAGTTAT 1199919 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 | |||| ||||| ||||| | ||| || | ||||| Sbjct 1199918 CATTGTGATAACTCTTCTGATAACTCCTGCTTAAAATT 1199881 >seq1894 Length=1134425 Score = 91.5 bits (100), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| ||||||| || |||| ||| | | || |||||| ||| |||| || Sbjct 544096 TCATCAGGAGGATAAAACTGAC-TGTCCTATGGCAGCCTGAACCCAACTCGTGTTCACTG 544154 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||| || |||| | || ||||||||||| | |||||| | | | Sbjct 544155 TTAGTGGGTGAGCAGTCCAGCATTTGTTGAATTCTGCTTTAGAGCGATAGGCAACAACAA 544214 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || | |||| | || |||| | | || | || ||||||| || | ||||| || Sbjct 544215 CAGCAAAGG-TAGTGAAACAACTTTATTCTG--CTCTGGGCTGCCGCAGGGCAGTTTTCT 544271 Query 211 CTGTGGTAACTTTTCTGGCACCT 233 || |||||||||||||| || || Sbjct 544272 CTATGGTAACTTTTCTGCCATCT 544294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854340918240