Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1512 208 2e-51 seq1410 176 1e-41 seq1742 123 8e-26 seq6912 114 4e-23 >seq1512 Length=8072128 Score = 208 bits (230), Expect = 2e-51 Identities = 141/157 (90%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||||||| ||||||| ||||| | ||||||||| Sbjct 7316674 GTACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 7316615 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | ||||||| |||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 7316614 TCCCGGGGTCGGGAGTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGACGTGGTAGCCGT 7316555 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 |||||||||||||||||| |||||||||||| ||||| Sbjct 7316554 TTCTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCC 7316518 >seq1410 Length=141385 Score = 176 bits (194), Expect = 1e-41 Identities = 166/206 (81%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351 ||||||||| ||| |||||| ||| | | || || ||||| | | | | ||||||| Sbjct 26469 GTTGGTTTTGG-TCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTAT 26411 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTA-CTATCAAATAAACGATA 407 |||||||||||||||||| |||||||| ||| | | || | | | |||| ||| ||| Sbjct 26410 TAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGGAGCGACCAAAGGAACCATA 26351 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 26350 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCACCCGTGTGTACTTAGACATGCAT 26291 Query 468 GGCTTAATCTTTGAGACAAGCATATG 493 |||||||||||||||||||||||||| Sbjct 26290 GGCTTAATCTTTGAGACAAGCATATG 26265 >seq1742 Length=122324 Score = 123 bits (136), Expect = 8e-26 Identities = 125/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||||| || || | ||| |||| ||||| |||||||| | || | Sbjct 20492 CTCATTCCAATTACAAGGCCTCGAATATCCC-GTATTGTTATTTTTTGTCACTTCTTCTC 20550 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | | || ||||||||||| | |||||||| |||||| |||||||||||| |||||| Sbjct 20551 TGGTTTGAGAGTGGGTAATTTGTGGGCCTGCTGTCTTCCTCGGATGTGGTAGCTGTTTCT 20610 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163 ||| ||||| | || | ||||| || ||| |||||||| Sbjct 20611 GAGG-TCCCTTTTTGGGACCGAACACTGATTTCCCGTTAC 20649 >seq6912 Length=3990798 Score = 114 bits (126), Expect = 4e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||| | |||||||| ||||| || ||| |||||||||||| |||||||||||||||| Sbjct 178858 TTTTTGGTCACTACTTCCCCAGCTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTT 178799 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 | |||||| || | ||||||||||||||| ||| ||||| |||||| Sbjct 178798 GAATGTGGCAGTCATTTCTCAGGCTCCCTGTCCAGAATCCAACCCT 178753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510295555840