Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1512 208 2e-51
seq1410 176 1e-41
seq1742 123 8e-26
seq6912 114 4e-23
>seq1512
Length=8072128
Score = 208 bits (230), Expect = 2e-51
Identities = 141/157 (90%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||||||||| | || |||||||| ||||||| ||||| | |||||||||
Sbjct 7316674 GTACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 7316615
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||| | ||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 7316614 TCCCGGGGTCGGGAGTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGACGTGGTAGCCGT 7316555
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156
|||||||||||||||||| |||||||||||| |||||
Sbjct 7316554 TTCTCAGGCTCCCTCTCCAGAATCGAACCCTGATTCC 7316518
>seq1410
Length=141385
Score = 176 bits (194), Expect = 1e-41
Identities = 166/206 (81%), Gaps = 8/206 (4%)
Strand=Plus/Minus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351
||||||||| ||| |||||| ||| | | || || ||||| | | | | |||||||
Sbjct 26469 GTTGGTTTTGG-TCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTAT 26411
Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTA-CTATCAAATAAACGATA 407
|||||||||||||||||| |||||||| ||| | | || | | | |||| ||| |||
Sbjct 26410 TAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGGAGCGACCAAAGGAACCATA 26351
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
|||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 26350 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCACCCGTGTGTACTTAGACATGCAT 26291
Query 468 GGCTTAATCTTTGAGACAAGCATATG 493
||||||||||||||||||||||||||
Sbjct 26290 GGCTTAATCTTTGAGACAAGCATATG 26265
>seq1742
Length=122324
Score = 123 bits (136), Expect = 8e-26
Identities = 125/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63
||||||||||||||||| || || | ||| |||| ||||| |||||||| | || |
Sbjct 20492 CTCATTCCAATTACAAGGCCTCGAATATCCC-GTATTGTTATTTTTTGTCACTTCTTCTC 20550
Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123
| | | || ||||||||||| | |||||||| |||||| |||||||||||| ||||||
Sbjct 20551 TGGTTTGAGAGTGGGTAATTTGTGGGCCTGCTGTCTTCCTCGGATGTGGTAGCTGTTTCT 20610
Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163
||| ||||| | || | ||||| || ||| ||||||||
Sbjct 20611 GAGG-TCCCTTTTTGGGACCGAACACTGATTTCCCGTTAC 20649
>seq6912
Length=3990798
Score = 114 bits (126), Expect = 4e-23
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104
||| | |||||||| ||||| || ||| |||||||||||| ||||||||||||||||
Sbjct 178858 TTTTTGGTCACTACTTCCCCAGCTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTT 178799
Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150
| |||||| || | ||||||||||||||| ||| ||||| ||||||
Sbjct 178798 GAATGTGGCAGTCATTTCTCAGGCTCCCTGTCCAGAATCCAACCCT 178753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510295555840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |