Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq860 91.5 1e-13 seq1573 86.0 5e-12 seq1728 82.4 6e-11 >seq860 Length=330425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 176514 TCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 176573 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | |||| | | |||||| || || | || |||| || Sbjct 176574 GTCTCAAAAATTTGCTGGTTCAAGTGC-TGGGCCTCAGGACTTTC-AAAGGGGTACCTCA 176631 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || ||||| ||||| || ||||| || ||||||||||| || | Sbjct 176632 TCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGACGATGGCGTCTGT 176691 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 176692 TGGAGCGT 176699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 180377 CATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 180436 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || ||| || ||||| || || ||||| ||||| ||||||||| || ||||| Sbjct 180437 CCCAGTATTCTTCTTTAAGTCAAGAAATTCAAAAATGTCCAAATGCCATGGCTCAAGGTA 180496 Query 66460 GATGGCGAA 66468 ||||||||| Sbjct 180497 GATGGCGAA 180505 >seq1573 Length=591436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 61296 TTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCT 61355 ||||||||| |||||||||||||||||||| ||| | || ||||| ||||||||| |||| Sbjct 539700 TTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCGGAAATGTACAGTCTTCT 539641 Query 61356 CATCGATACGTACAT 61370 || || || ||||| Sbjct 539640 TATTGACACATACAT 539626 >seq1728 Length=2076782 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| ||||| || |||||| Sbjct 1513645 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATCCTTATTGAGAAT 1513704 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | || || || || ||||||| Sbjct 1513705 GTTCACTCAGAGATGTACAGCTTGCTTATAGACACTTACATCA 1513747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534494335600