Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq513 170 4e-40 >seq513 Length=162718 Score = 170 bits (188), Expect = 4e-40 Identities = 195/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1412 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1355 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||| ||||| | |||||| |||| || | | Sbjct 1354 ATGCCCTTAGATGTCCGGGGCCGCACGCACGCTATGCAGACAGACTCAACTTGTGCCTAC 1295 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | | ||| ||| ||| | | | || Sbjct 1294 CCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTTGTGATGGAGATTGGGGAATG 1235 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || || || | ||| |||||||||| || |||||| || || || ||| |||||||||| Sbjct 1234 CAGTTCTTCCCCTTGAACGAGGAATTCCCAGTAAGTGCAGGTTATAAGCTCGCGTTGATT 1175 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1174 AAGTCCCTGCCCTTTGTA 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947177636608