Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq301 259 2e-66 seq2142 140 1e-30 seq13 87.8 6e-15 seq186 86.0 2e-14 >seq301 Length=911233 Score = 259 bits (286), Expect = 2e-66 Identities = 175/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 37351 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 37292 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| || |||||| | |||||||||||||||||||||||||||| || | Sbjct 37291 CAGGGTCTTCTTTCTCCACTGATTGCACCAAGCCCGTTCCCTTGGCTGTGGTTTCACTGG 37232 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| || |||| |||||||||| |||||||||||| ||||||||||||||| Sbjct 37231 ATAGTAGGTAGAGAGAGTGAGAATCTCGTTCATCCATTCATGCATGTCACTAATTAGATG 37172 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 37171 ATGAGGCATTTGGCTA 37156 Score = 129 bits (142), Expect = 2e-27 Identities = 93/106 (88%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT-ACCCGCGCTTGGTTGAATTTCTT 487 ||| |||||| ||||||||||||||||| ||| ||| |||| | ||| ||||||||||| Sbjct 28344 GCTGCCTTAAAAGAGTCATAGTTACTCCTGCCATTTTACCCTCACTTCATTGAATTTCTT 28285 Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| ||||||||||||||||||| ||||| || |||||| Sbjct 28284 CACTTTGACACTCAGAGCACTGGGCAGAAACCACATGGCATCAACA 28239 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||| |||| || |||| |||| | ||||||||||||||||||| Sbjct 37637 CTTCTGCTCCATGAGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 37578 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| | ||||||| ||||||||||||||| || |||| Sbjct 37577 CTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCACTGTC 37531 >seq2142 Length=1137 Score = 140 bits (154), Expect = 1e-30 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 ||| || | |||||||||||||||||||| | |||||||||||||| |||||||||||| Sbjct 269 GCTGCCCTCAGAGAGTCATAGTTACTCCCACTGTTTACCCGCGCTTCATTGAATTTCTTC 328 Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| || | || |||| Sbjct 329 ACTTTGACATTCAGAGCACTGGGCAGAAATCATATCGTGTGAACA 373 >seq13 Length=7761792 Score = 87.8 bits (96), Expect = 6e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 46077 ATTTCTTCACTTTGACATTCAGGGCACTGGGCAGAAATCACATTGCATCAACA 46025 >seq186 Length=1883889 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 17 ACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGA 76 ||||||| |||| || |||| |||| | ||||| ||||||||| ||| || |||| Sbjct 1867104 ACAGGAGGTTTCCGTCCTCCCTGAGCTCACCTTAAGACACCTGCATTACACTTCGACAGG 1867045 Query 77 TGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||||||||| ||||||||||||||| | |||| Sbjct 1867044 TGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 1867008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635161392928