Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq301 96.9 6e-18 seq347 87.8 3e-15 seq186 86.0 1e-14 seq513 78.8 2e-12 >seq301 Length=911233 Score = 96.9 bits (106), Expect = 6e-18 Identities = 95/119 (80%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| |||| || |||| || || | Sbjct 37962 GTACGAGAGGAACCGCAGG-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 38019 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | ||||| |||||||||||| || ||||| |||||||||||||||||||||||| |||| Sbjct 38020 GGCGCGAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 38077 >seq347 Length=630965 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||| |||| || |||| || || | Sbjct 14453 GTACGAGAGGAACTGCAGG-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 14396 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | ||||| |||||||||||| || ||||| |||||||||||||| ||||||||| |||| Sbjct 14395 GGCGCGAGGCTACCATCTGCAGGCTTATGACTGAACGCCTCTAAATCAGAATCC-TGCC 14338 >seq186 Length=1883889 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | || |||||| | ||| |||| || |||| || || | Sbjct 1867439 GTACGAGAGGAACCACAGA-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 1867496 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||| | ||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1867497 GGCGCAAGCCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC 1867550 >seq513 Length=162718 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||| | ||| || |||| || || || ||| | |||||||||||| || ||||| | Sbjct 8450 TGGTGTATGCACTTGGCTGAGGAGCCACTGGCGCAAGGCTACCATCTGCGGGCTTATGAC 8391 Query 92 TGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 ||||||||||||||||||||||| | | ||| Sbjct 8390 TGAACGCCTCTAAGTCAGAATCCCTCCTAGA 8360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819181263104