Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq314 111 1e-19 seq113 98.7 8e-16 seq16 93.3 3e-14 >seq314 Length=901204 Score = 111 bits (122), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 492518 GGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 492459 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | |||||||| | |||||| || ||||| ||||| || Sbjct 492458 GTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTG 492399 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 492398 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 492359 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||| || |||| || || | ||||| ||||| || | Sbjct 491110 CATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTTT 491051 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 491050 GCCTGTG-TTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 490992 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 490991 AGATGGCAAA--AGCCC 490977 >seq113 Length=2896879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 19793 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 19852 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||||||| Sbjct 19853 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 19909 >seq16 Length=7092959 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 6188329 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 6188270 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| | || Sbjct 6188269 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGG 6188210 Query 61376 A 61376 | Sbjct 6188209 A 6188209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 6189165 GAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 6189106 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || || || || || ||||||||||||| ||||||||| Sbjct 6189105 AAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 6189068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556560105040