Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq74 188 1e-45 seq1 167 4e-39 seq1966 161 1e-37 >seq74 Length=13208 Score = 188 bits (208), Expect = 1e-45 Identities = 203/258 (79%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| | Sbjct 2249 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2306 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||| || |||| | ||||| ||||||| |||||| | || Sbjct 2307 CTCGTTCATGGGGAACAGTTCCAATCCCCAATCCCTATCACGAATGGGTTTCAACGGGTT 2366 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||| |||| |||| |||| | || || ||| | ||| ||||||||||||||||| Sbjct 2367 ACCCACGCCTGCCGGCGAAGGGCGGACACACGCTGA-TCCATTCAGTGTAGCGCGCGTGC 2425 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| | |||||||||||||||||||||||||||||| ||||| || |||| || || Sbjct 2426 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTGAA 2483 Query 239 AGGCCATC-TCCCTCGAA 255 || | || |||||| || Sbjct 2484 AGCCACTCGTCCCTCTAA 2501 >seq1 Length=118548696 Score = 167 bits (184), Expect = 4e-39 Identities = 172/219 (79%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 9436435 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 9436378 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 9436377 CTCGTTCACGGGGAAGAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 9436318 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || || |||| |||| ||| ||| ||| | ||| ||||||||||||||||| Sbjct 9436317 ACTCGCGCCTGCCGGCGGAGGG--TAGGCTCAAGATGAGCCAGTCAGTGTAGCGCGCGTG 9436260 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 |||||| | |||| ||||||||||||||||||||||||| Sbjct 9436259 CGGCCCCGGACATTTAAGGGCATCACAGACCTGTTATTG 9436221 >seq1966 Length=2429 Score = 161 bits (178), Expect = 1e-37 Identities = 176/227 (78%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 293 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 236 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT-ATCCCCATCACGATGAAATTTCAAAGA-T 118 |||||| | | || ||||||||| | ||||||||||| | ||||| | | Sbjct 235 CTCGTTCACGGGGAAGAATTGCAATCCCCCGATCCCCATCACTAATGGGGTTCAACGGGT 176 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||| |||| ||| | || | ||| |||||||||||||||||| Sbjct 175 TACCCGCGCCTGCCGGCGGAGGGTAGGCACAAGCTGAGCCAGTCAGTGTAGCGCGCGTGC 116 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || || | |||||||||||||||||||||||||||||| ||||| || Sbjct 115 GGTCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751729755640