Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq74 253 3e-65 seq1966 109 9e-22 seq1 107 3e-21 seq30583 78.8 1e-12 seq676 75.2 2e-11 >seq74 Length=13208 Score = 253 bits (280), Expect = 3e-65 Identities = 207/247 (84%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 2408 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 2466 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGT 133 || || | |||||| |||||| | ||||||||||||||| | || ||| | || Sbjct 2467 AATCT-CGTGTGGCTGAAAGCCACTCGTCCCTCTAAGAAGCTCAACGCCGACCGCACAGG 2525 Query 134 CGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||| |||||| || |||||||||||||||||||| |||||||||||| Sbjct 2526 GGCCGCGTAGCTAGTTAGCACGTCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAAT 2585 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| Sbjct 2586 CGCTCCACCAACTACGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCA 2645 Query 252 ATCTGTC 258 ||||||| Sbjct 2646 ATCTGTC 2652 >seq1966 Length=2429 Score = 109 bits (120), Expect = 9e-22 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||||| || | |||||||||||||||||||||||||||||| || Sbjct 134 GTCAGTGTAGCGCGCGTGCGGTCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 76 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 ||| | || ||| || | |||| | |||||||||||| Sbjct 75 CAATC-TCGGGTGGGTGAACGCCACTTGTCCCTCTAAGA 38 >seq1 Length=118548696 Score = 107 bits (118), Expect = 3e-21 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | Sbjct 9436277 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATTTAAGGGCATCACAGACCTGTTATTG-AT 9436219 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||| ||||||| Sbjct 9436218 CAATC-TCGGGTGGCTGAACGCCACTCGTCCCTGTAAGAAG 9436179 >seq30583 Length=9743 Score = 78.8 bits (86), Expect = 1e-12 Identities = 68/83 (82%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||| ||||| | |||||||||||||||| |||||||||||| ||| | ||||| Sbjct 2888 AATTAACTAGACAGTTG-CTCCACCAACTAAGAAAGGCCATGCACCATCACTAACAGAAT 2830 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||| || |||||| Sbjct 2829 TCAGAAAGAGCTCTCCCTCTGTC 2807 >seq676 Length=62374962 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||| ||||| | |||||||||||||||| ||||||||||| ||| | ||||| Sbjct 23622593 AATTAACTAGACAGTTG-CTCCACCAACTAAGAAAGGCCATGCACCGTCACTAACAGAAT 23622535 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||| || |||||| Sbjct 23622534 TCAGAAAGAGCTCTCCCTCTGTC 23622512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796513655976