Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq74 196 9e-48 seq1966 178 2e-42 seq1 176 9e-42 >seq74 Length=13208 Score = 196 bits (216), Expect = 9e-48 Identities = 239/317 (75%), Gaps = 13/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC--CCGCTTTGGCGGGTCGCCG----GCT 73 || |||||| || |||||| |||| | || || || || ||||| || ||| Sbjct 2561 GAACGAGACTCCGACGTGCTAACTAGCTACGCGGCCCCTGTGC--GGTCGGCGTTGAGCT 2504 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | |||| |||| || | ||||| |||||||||||||||||| Sbjct 2503 TCTTAGAGGGACGAGTGGCTTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGAT 2446 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATCAC 191 |||||||||||| | ||||||||||||||||||||||| | || || || || | | Sbjct 2445 GCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAATGGATCAGCGTGTGTCCGC-C 2387 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| ||||| ||| ||||||| | | |||| | ||||| | ||||| | | |||| Sbjct 2386 CTTCGCCGGCAGGCGTGGGTAACCCGTTGAAACCCATTCGTGATAGGGATTGGGGATTGG 2327 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2326 AACTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTTGCGTTGATTA 2267 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 2266 AGTCCCTGCCCTTTGTA 2250 >seq1966 Length=2429 Score = 178 bits (196), Expect = 2e-42 Identities = 197/258 (76%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||| | ||| ||| || | || ||||| ||||||||||||||||| Sbjct 38 TCTTAGAGGGACAAGTGGCGTTCA--CCCACCCGAGATTGAG-CAATAACAGGTCTGTGA 94 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | || ||||||||||||||||||||| | || | || | | | Sbjct 95 TGCCCTTAGATGTCCGGGACCGCACGCGCGCTACACTGACTGGCTCAGCTTGTGCCTACC 154 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC-ATTG 250 || ||||| ||| |||||| | | || | | | ||| ||||||| | | |||| Sbjct 155 CTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTAGTGATGGGGATCGGGGGATTG 214 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 215 CAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 274 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 275 AAGTCCCTGCCCTTTGTA 292 >seq1 Length=118548696 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||| |||||| | ||| | |||| || | |||| |||||||||||||||| Sbjct 9436179 CTTCTTACAGGGACGAGTGGCGTTCAGCCACCCGA-GATTGAT-CAATAACAGGTCTGTG 9436236 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| |||| | |||||||||||||||||||||||| | || | | | | Sbjct 9436237 ATGCCCTTAAATGTCCGGGGCCGCACGCGCGCTACACTGACTGGCTCATCTTGAGCCTAC 9436296 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| | |||| | | || | | ||||| ||||||| | | |||| Sbjct 9436297 CCTCCGCCGGCAGGCGCGAGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 9436356 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 9436357 CAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 9436416 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 9436417 AAGTCCCTGCCCTTTGTA 9436434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946848626688