Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taeniopygia_20guttata_20[refseq_20GCF_5F000151805.1_202013-02-08] 37,096 sequences; 1,232,135,591 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq242 401 2e-107 >seq242 Length=156412533 Score = 401 bits (444), Expect = 2e-107 Identities = 324/388 (84%), Gaps = 3/388 (1%) Strand=Plus/Minus Query 5822 GGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGT 5881 |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 113594108 GGTACGCATACTATCATCGCGATAGATGATCGGGGATTCAGTAACATGCACGCCGGAAGT 113594049 Query 5882 GAACTCAAAGAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGC 5941 ||| || || |||||| || |||||||| ||||||| ||| ||| |||||| ||||| Sbjct 113594048 GAATTCTAACAGGGTTAAGGAGTCGTTCTAGTACTGTATTCTGCAGCCCAGTGGCTTAGC 113593989 Query 5942 GTTAACTTCCGGAGCCACACCGGTGCAAACCTCGGCAAGCAGGGTGTGGAAGTAGGACAT 6001 ||| | ||||||| |||||||| || ||| || ||||||||||||||||||||||||| Sbjct 113593988 GTT-AGATCCGGAGTCACACCGGCGCTAACGTCAGCAAGCAGGGTGTGGAAGTAGGACA- 113593931 Query 6002 TTTCATGTCAGGCCATTTCTTTCCTGAGCGGGGTTTTGCTATCACGTTGTGAACTTCTGA 6061 ||||||||||| ||| |||||||| |||||||| || |||||||||||||| ||||| Sbjct 113593930 TTTCATGTCAGTCCAGTTCTTTCCGGAGCGGGGCGTTCATATCACGTTGTGAATCTCTGA 113593871 Query 6062 AGCGGTGATGAC-GCCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTC 6120 |||| |||| || ||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 113593870 AGCGTTGATCACATACGAGCCGTAATTTATGCCACGCATCATCCCGCTGTTCGACAGCTG 113593811 Query 6121 TCACGTCGATTCCGGTACGCTGCAGGATAATGTCCGGTGTCATGCAGCCACCTTCTGCTC 6180 |||| ||||| | ||||| ||| ||| ||||| || |||||| ||||| |||||| Sbjct 113593810 TCACATCGATCCTCGTACGTAGCATGATCATGTCTGGAGTCATGATGCCACGATCTGCTA 113593751 Query 6181 AGAGGCTTTCTGTTTCAGGAATCCAAGA 6208 | | || |||||||||||||||||| Sbjct 113593750 TATGCCGTTTTGTTTCAGGAATCCAAGA 113593723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175468269530016