Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1524 192 9e-47 seq13196 132 7e-29 >seq1524 Length=7683 Score = 192 bits (212), Expect = 9e-47 Identities = 184/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 5218 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 5275 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 5276 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 5335 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 5336 ACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 5394 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 5395 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 5440 >seq13196 Length=161287 Score = 132 bits (146), Expect = 7e-29 Identities = 173/234 (74%), Gaps = 13/234 (6%) Strand=Plus/Plus Query 7 AGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAG--GAATTTCCTCG 64 |||| |||||| || |||| |||||||| ||||| || |||||| | | | ||||||| Sbjct 130725 AGGGGAGGGACTTAATCAATGCGAGCTT-ATGACCTGCACTTACTCGTGGGAATTCCTCG 130783 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA-TT 119 || | | || || |||||| | ||||||||||| |||| ||||| | || Sbjct 130784 TTCATGGGTAATAACTGCAATCCCCAATCCCCATCAC----AAATGGGGTTCAACGGGTT 130839 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | | || | ||| ||||||||||||| |||| Sbjct 130840 ACCCGCGCCTGCCGGCGTAGGGTAGACACAAGCTGAGCCAGTCAGTGTAGCGCGTGTGCA 130899 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 130900 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 130952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751398885510