Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1524 154 6e-35 seq6656 95.1 5e-17 seq4207 75.2 5e-11 >seq1524 Length=7683 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || || ||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 3032 AGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATACCTGAGCAGGATGAAGCCAGA 2973 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || | || ||||| ||||||||||||||||| | || ||| Sbjct 2972 GGAAACTCTGGTGGAGGTCCGAAACGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 2913 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 2912 ATAGGGGCGA 2903 Score = 116 bits (128), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||| || |||||| ||||| ||| | |||| || ||||| |||||| Sbjct 3845 GAGTCGGGTTGTTTGAGATTGCAGC-CTAAAGAGGGTGATAAACCTCATCTAAGGCTAAA 3787 Query 99 TATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 ||| | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| Sbjct 3786 TAT-GACCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGA 3728 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||||| || || ||||||| | ||| | |||| || Sbjct 3727 AGAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 3686 >seq6656 Length=452415 Score = 95.1 bits (104), Expect = 5e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||| | Sbjct 50598 GACCCGAAAGATGGTGAACTATGCCTGGGTAGGGCGAAGACGGAGGAAACTCTGGTGGGG 50657 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATC 656 | || ||| | ||| ||||||||| Sbjct 50658 GTCCGTAGCTTTCCTGATGTGCAAATC 50684 >seq4207 Length=589996 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 337040 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGCGGTAAACTCCATCTAAGGCTAAAT 337099 Query 100 ATTGGCCAGAGACCGATAG 118 | ||| ||||||||||| Sbjct 337100 ACCGGCACGAGACCGATAG 337118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078230074700