Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1524 226 5e-57 seq13196 208 1e-51 seq10100 87.8 3e-15 seq2212 86.0 1e-14 >seq1524 Length=7683 Score = 226 bits (250), Expect = 5e-57 Identities = 199/243 (82%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 5377 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 5435 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC-ACCAACCATAGTCG 135 | |||| |||| | || | |||||||||||||| | | ||| || || Sbjct 5436 A-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGAACAAAATTATTCA 5494 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | |||||||| ||| || |||||| ||||||||||||| |||||||||||||||| Sbjct 5495 GTAA--CTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCACT 5552 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||| Sbjct 5553 CCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTCTCAATCT 5612 Query 256 GTC 258 ||| Sbjct 5613 GTC 5615 >seq13196 Length=161287 Score = 208 bits (230), Expect = 1e-51 Identities = 208/266 (78%), Gaps = 23/266 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 130880 GTCAGTGTAGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 130938 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT-AAGAAGCCAGCCACCAACCA---- 129 ||| || | |||||| | |||| | |||||||| |||||| | ||| | ||| Sbjct 130939 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTTAAGAAGTTGGACACTACCCAAGAA 130997 Query 130 -TAGT------CGATGGGGC--------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| | ||||| || |||||| | | |||| ||||||||| | Sbjct 130998 GTAGTTACGTGCTCTGGGGTCGCGCAGTTAGTTAGCATGCCAGAGTCTTGTTCGTTATTG 131057 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| Sbjct 131058 GAATTAACCAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATGGAA 131117 Query 235 TCAAGAAAGAGCTATCAAT-CTGTCC 259 || |||||||||| ||| | |||||| Sbjct 131118 TCGAGAAAGAGCTGTCAGTCCTGTCC 131143 >seq10100 Length=541703 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| |||||||| ||||||| ||||| |||||||||||| ||| || |||| Sbjct 5060 CAGACAAATCGCTCCACCAGCTAAGAAGAGCCATCCACCACCACCCACAGAGTCGAGAAG 5001 Query 243 GAGCTATCAATCTGTC 258 ||||| ||| |||||| Sbjct 5000 GAGCTCTCAGTCTGTC 4985 >seq2212 Length=505317 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| || | |||||||||||||||||||||| |||||||| ||||| |||||||||| | Sbjct 500335 ATCGCTGCTCCAACTAAGAACGGCCATGCACAACCACCCACGGAATCGAGAAAGAGCTCT 500394 Query 250 CAATCTG 256 ||||||| Sbjct 500395 CAATCTG 500401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796163074434