Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1524 351 2e-94 seq5907 145 1e-32 seq7675 109 9e-22 >seq1524 Length=7683 Score = 351 bits (388), Expect = 2e-94 Identities = 238/266 (89%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 630 CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGG 689 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 690 TGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC 749 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 750 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 809 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA------CTAAAGGATCGAT 267 ||||||||||||| ||||||| || ||| ||| | | | ||||||||||| Sbjct 810 GGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAAAAAAAAATTCAAAAGGATCGAT 869 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||||| ||| ||||||| Sbjct 870 AGGCCACGCTTTCGCGGTCTGTATTC 895 >seq5907 Length=247725 Score = 145 bits (160), Expect = 1e-32 Identities = 146/185 (79%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCT-AAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||||| | Sbjct 119105 AAACTGTCCTGTCTCATGA-GGTCTGAAACCTCGCTCACGTTCCCTATCAGTGGGTGAGC 119163 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||||| |||| || |||||||| | ||| |||||||||| || || ||||| || Sbjct 119164 AATCCAAGGCTTGGTGATTTCTGCTTGG---TGACAGGAAGAGCCAACTTCAAAGGACCA 119220 Query 164 AAAAGCAACGTCGCTATGAACGC-TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 || ||| | || ||||||| || || | ||||| ||| ||||| || ||||| ||| Sbjct 119221 AACAGCCATGTGGCTATGAGTGCTTTAGTCATCACAAACCACTTATCTCTTTGGTATCTT 119280 Query 223 TTCTG 227 ||||| Sbjct 119281 TTCTG 119285 >seq7675 Length=503495 Score = 109 bits (120), Expect = 9e-22 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||||||||| |||||||| || ||||| || || | ||| || | Sbjct 168429 TCATCAGTAGGATAAAACTAATCTGTCTCAAGATAATCTAAGCCAAGAT--TGTTTCCCA 168372 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | || |||| ||||| || | ||||||| || | |||||| ||||||| | Sbjct 168371 CTCTCTGGCAAACAGTCCAAAGCCTGGTGAATTCTCCTCCACAGTGATAGAAAGAGCCAA 168312 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||| |||| ||| || || |||| |||| | ||||||||| |||| Sbjct 168311 CATCAGAGGATCAGAAAGAAACATCACTGTGAATACTTGAACTCTACAAGCCAGGTATCA 168252 Query 211 CTGTGGTAACTTTTCTG 227 ||||| ||||| || || Sbjct 168251 CTGTGATAACTATTGTG 168235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853695000384