Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1524 459 9e-127 seq8404 250 8e-64 seq10394 242 1e-61 seq4902 161 3e-37 seq7367 118 3e-24 seq7724 104 8e-20 seq3073 80.6 9e-13 >seq1524 Length=7683 Score = 459 bits (508), Expect = 9e-127 Identities = 433/556 (78%), Gaps = 42/556 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 929 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 988 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || || || Sbjct 989 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGTGCGAGTC 1048 Query 127 GGCCCG---CGAAGGACCTTAACGCCAG---AAAATGG-------TCGGTGAAGAC--CA 171 | | ||| | ||||| | ||||| | | || | || Sbjct 1049 GTTAAATTACCAAGTAATTTAACTTAAATCAAAAATTTCAAAACATATATTAATGCTTCA 1108 Query 172 GTTC-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT------- 223 ||| || || | || |||||||| || |||| | |||||||||||||||| Sbjct 1109 ATTCTCGTTTTACCGAATAAGTAAAGAATCGATGAAAGTAGTGGTATTTCACTGTTGGTA 1168 Query 224 -------------------TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTC 264 | | ||| ||||||||||| |||||||||||| | | Sbjct 1169 AATTGTATTAATAAAAAAATACAAAAAAAAACCTCCCACTTATGCTACACCTCTCATGAC 1228 Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||||| |||| ||||||||||||||||||||||||||||||||||||||| | || Sbjct 1229 TCTTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTGTTTGC 1288 Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1289 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 1348 Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 444 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1349 TTAATCCATTCATGCGCGTCACGAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 1408 Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1409 CATAGTTACTCCCGCCGTTTACCCGCGCTTCGTTGAATTTCTTCACTTTTACATTCAGAG 1468 Query 505 CACTGGGCAGAAATCA 520 |||||||||||||||| Sbjct 1469 CACTGGGCAGAAATCA 1484 >seq8404 Length=215406 Score = 250 bits (276), Expect = 8e-64 Identities = 173/196 (88%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||| ||||||||||||||||| ||| |||||| | | ||||||||||| |||||| Sbjct 111361 CTACCATTTATTCTACACCTCTCATGTCTCTTCACAGCGACAGACTAGAGTCAGGCTCAA 111302 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| | Sbjct 111301 CAGGGTCTTCTTTTCCCACTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGG 111242 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| || ||||||||||||||||||| || ||| |||||||| ||||||||||||||| Sbjct 111241 ATAGCAGGTAGGGACAGTGGGAATCTCATTCATCTATTCATGCATGTCACTAATTAGATG 111182 Query 417 ACGAGGCATTTGGCTA 432 ||||||||||| |||| Sbjct 111181 ACGAGGCATTTAGCTA 111166 >seq10394 Length=29923 Score = 242 bits (268), Expect = 1e-61 Identities = 161/179 (90%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 ||||||| || |||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 5577 CCTCTCATCTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 5518 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||| Sbjct 5517 GCTGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAG 5458 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||| ||| |||||||||| | ||||||||||||| ||||||||||||| Sbjct 5457 TGGGAATCTCGTTCATCTATTCATGCGCATTGCTAATTAGATGACAAGGCATTTGGCTA 5399 Score = 241 bits (266), Expect = 4e-61 Identities = 165/186 (89%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||| |||||| ||| ||| |||||| | | |||||||||||||||||| Sbjct 26665 CTCCCACTTATTCCACACCTTTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 26606 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||||||||||||||||| | |||||| ||||||||||||||||||| || | Sbjct 26605 GAGGGTCGTCTTTCCCCGCTGATTCCACTAAGCCCATTCCCTTGGCTGTGGTTTCACTGG 26546 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 26545 ATAGTAGGTAGGGAGAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGAAG 26486 Query 417 ACGAGG 422 | |||| Sbjct 26485 ATGAGG 26480 >seq4902 Length=53140 Score = 161 bits (178), Expect = 3e-37 Identities = 101/109 (93%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| Sbjct 20119 CCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTC 20178 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| ||||||||| || |||||||||||||||||||||||||||||| Sbjct 20179 GTTCATCCATTCACCTGCATCACTAATTAGATGACGAGGCATTTGGCTA 20227 >seq7367 Length=331791 Score = 118 bits (130), Expect = 3e-24 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| |||||||| |||||| ||||||||||| ||| |||| |||||| |||||||| Sbjct 50522 TTTTGCTGGATAGTAGGTAGGGATAGTGGGAATCTTGTTCATCCGTTCATGTGCGTCACT 50581 Query 408 AATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||| Sbjct 50582 AATTAGATGACGAGGCATTTGGCTA 50606 >seq7724 Length=21680 Score = 104 bits (114), Expect = 8e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||| |||| ||||||||| ||| |||| || | ||| | ||||||||||||||| Sbjct 20209 CTTAAGAGCGTCACAGTTACTCCTGCCATTTAGCCACACTTCATGGAATTTCTTCACTTT 20150 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | || | ||| ||||||| ||||||||||||| |||||| Sbjct 20149 GGCAGTTGGAGAACTGGGCTGAAATCACATTGCATCAACA 20110 >seq3073 Length=15487 Score = 80.6 bits (88), Expect = 9e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 13299 GTTCATCCATTCATGCGCGTCACTACTTAGATGACGAGGCATTTGGCTA 13347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633850731072