Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11103 89.7 4e-13 seq11853 87.8 1e-12 seq10844 84.2 2e-11 >seq11103 Length=185963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 143697 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 143638 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | || ||||| || ||||||||||||||||| | ||||| || || ||||||| Sbjct 143637 TCCTTATTGAGAACGTTCACTCGGAGATGTACAGCTTGCTCATAGACACTTACATCA 143581 >seq11853 Length=150111 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || |||||||||||||| |||||||||||||||||||| || | || || || |||||| Sbjct 135835 GAAGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACATTCAGAAATGTAC 135776 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 135775 AGTCTTCTAATTGACACATACAT 135753 >seq10844 Length=18256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 8154 CATGAAGAGATCGGGGATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCCTCTTT 8213 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || ||| || ||||| || || ||||| ||||| |||||| || || ||||| Sbjct 8214 CCCAGTATTCTTCTTTAAGTCAAGAAATTCAAAAATGTCCAAATGCCACGGCTCGAGGTA 8273 Query 66460 GATGGCGAA 66468 |||||| || Sbjct 8274 GATGGCAAA 8282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397168189964960