Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 6e-24
seq53 109 9e-22
>seq1
Length=54145758
Score = 116 bits (128), Expect = 6e-24
Identities = 177/246 (72%), Gaps = 7/246 (3%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| | |||| |||| | |||||||| || ||||||||||||| || |
Sbjct 38015820 GTCAGTGTAGCAAGTGTGCAGCCCCAGATATCTAAGGACAACACAGACCTGTTACTGTGT 38015761
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
|| || |||||| | |||| | |||||||||||||| | ||||||| | ||
Sbjct 38015760 --AATCTCAGATGGCTGAATGCCACTTGTCCCTCTAAGAAGGTGGACACCAAC--TGCTC 38015705
Query 135 -GATGGGGC-TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192
| || | || | ||| | || ||| |||| |||||||||| || |||
Sbjct 38015704 AGGTGTCACGTAACTGGCATACCATGGACTCAAGGATTATTGGAATTAACCTGATAAAGT 38015645
Query 193 A-CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
| |||||||||||||||| ||||||||| | |||||| ||||| |||||||| | |
Sbjct 38015644 AGCTCCACCAACTAAGAATGGCCATGCAATATCACCCACAGAATTGAGAAAGAGTTCTTG 38015585
Query 252 ATCTGT 257
||||||
Sbjct 38015584 ATCTGT 38015579
>seq53
Length=3121555
Score = 109 bits (120), Expect = 9e-22
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| ||| ||||| ||||||||||||| ||| ||| |||||||||||| |||| |||
Sbjct 1448258 GTCTCATTCATTATCAGAATTAACCAGACGAATTGCTCTACCAACTAAGAATGGCCTTGC 1448199
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| ||||| ||||| | |||||||| ||||||||||
Sbjct 1448198 ACCATGACCCACAGAATTGACAAAGAGCTCTCAATCTGTC 1448159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796705936266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |