Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 116 6e-24 seq53 109 9e-22 >seq1 Length=54145758 Score = 116 bits (128), Expect = 6e-24 Identities = 177/246 (72%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| | |||||||| || ||||||||||||| || | Sbjct 38015820 GTCAGTGTAGCAAGTGTGCAGCCCCAGATATCTAAGGACAACACAGACCTGTTACTGTGT 38015761 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 || || |||||| | |||| | |||||||||||||| | ||||||| | || Sbjct 38015760 --AATCTCAGATGGCTGAATGCCACTTGTCCCTCTAAGAAGGTGGACACCAAC--TGCTC 38015705 Query 135 -GATGGGGC-TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | || | || | ||| | || ||| |||| |||||||||| || ||| Sbjct 38015704 AGGTGTCACGTAACTGGCATACCATGGACTCAAGGATTATTGGAATTAACCTGATAAAGT 38015645 Query 193 A-CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||| ||||||||| | |||||| ||||| |||||||| | | Sbjct 38015644 AGCTCCACCAACTAAGAATGGCCATGCAATATCACCCACAGAATTGAGAAAGAGTTCTTG 38015585 Query 252 ATCTGT 257 |||||| Sbjct 38015584 ATCTGT 38015579 >seq53 Length=3121555 Score = 109 bits (120), Expect = 9e-22 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||||||||||| ||| ||| |||||||||||| |||| ||| Sbjct 1448258 GTCTCATTCATTATCAGAATTAACCAGACGAATTGCTCTACCAACTAAGAATGGCCTTGC 1448199 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||| ||||| | |||||||| |||||||||| Sbjct 1448198 ACCATGACCCACAGAATTGACAAAGAGCTCTCAATCTGTC 1448159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796705936266