Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq5 340 3e-91
seq7719 325 7e-87
seq7014 260 2e-67
seq60 260 2e-67
seq7018 196 8e-48
seq33 165 1e-38
seq8 132 8e-29
seq17 131 3e-28
seq30 111 3e-22
seq2 107 3e-21
seq21 96.9 6e-18
seq27 93.3 7e-17
seq681 91.5 3e-16
seq107 84.2 4e-14
seq19 77.0 6e-12
seq3 75.2 2e-11
>seq5
Length=36382235
Score = 340 bits (376), Expect = 3e-91
Identities = 233/263 (89%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 20418908 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 20418967
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 20418968 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 20419027
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 20419028 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 20419087
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||||| |||||| || | ||| | | | |||||||| |||
Sbjct 20419088 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 20419147
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| | |||||| ||| |||||||
Sbjct 20419148 CCCCGCTTTCACGGTCTGTATTC 20419170
>seq7719
Length=2002
Score = 325 bits (360), Expect = 7e-87
Identities = 230/263 (87%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1387 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1328
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct 1327 TTAGTGGGTGAACAATCCCACGCTTGGTGAATTCTGCTTCAAAATGATAGGAAGAGCCGA 1268
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1267 CATCGAAGGATCAAAAGGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 1208
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||||| |||||| || | ||| | | | |||||||| |||
Sbjct 1207 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 1148
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| | || ||| ||| |||||||
Sbjct 1147 CCCCGCTATCACGGTCTGTATTC 1125
>seq7014
Length=15999421
Score = 260 bits (288), Expect = 2e-67
Identities = 180/204 (88%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 14808977 TCATCAGTAGGGTAAAATTAACCTGTCTCATGATGGTCTAATCCCAGCTCACGTTCCCTA 14808918
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||
Sbjct 14808917 TTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 14808858
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||||||||||| || | ||| | || ||||||| ||||||||||||||| |
Sbjct 14808857 CATTGAAGGATCAAAAAGTGACATTGCTGTTAATGCTTGGCCACCACAAGCCAGTTATTC 14808798
Query 211 CTGTGGTAACTTTTCTGGCACCTC 234
||||||||||||||||| || |||
Sbjct 14808797 CTGTGGTAACTTTTCTGACAACTC 14808774
Score = 87.8 bits (96), Expect = 3e-15
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||| |||||||||||||||||| |||||| ||| ||||||||| ||||||||
Sbjct 7568908 TCATCAGTAGAGTAAAACTAACCTGTCTCTTGACGGCTTAATCCCAGCTCATGTTCCCTA 7568849
Query 91 TTAGTGGGTGAAC 103
||| ||| ||||
Sbjct 7568848 CTAGCGGG-GAAC 7568837
>seq60
Length=8731434
Score = 260 bits (288), Expect = 2e-67
Identities = 209/251 (83%), Gaps = 1/251 (0%)
Strand=Plus/Minus
Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103
||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 7794139 AAAACTAACCTGTCTCACGACGGTCCAAACCCAGCTCACATTCCCTATTAGTGGGTGAAC 7794080
Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163
||||||| ||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 7794079 AATCCAATTCTTGGTGAATTCTGCTTCACAGCACTAGGAAGAGCCGACATTGAAGGATCA 7794020
Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223
||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 7794019 AAAAGTGACGTCGCTATGAACGCTTGGC-ACCACGGGCCAGTTATCCCTGTGGTAACTTT 7793961
Query 224 TCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283
|||| |||||| || | ||| || | |||||||| ||||| | ||||||||
Sbjct 7793960 TCTGACACCTCCTGCTTAAAACCCAACAGGTCAGAAGGATCGTGAGGCCCCGCTTTCATG 7793901
Query 284 GTTTGTATTCA 294
|| ||||||||
Sbjct 7793900 GTCTGTATTCA 7793890
>seq7018
Length=17465556
Score = 196 bits (216), Expect = 8e-48
Identities = 120/128 (94%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 7839360 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTA 7839301
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 7839300 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 7839241
Query 151 CATCGAAG 158
||||||||
Sbjct 7839240 CATCGAAG 7839233
Score = 163 bits (180), Expect = 5e-38
Identities = 107/118 (91%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 16969966 TCATCAGTAGGGTCAAACTAACCTGTCTCACGACGGTCCAATCCCAGCTCACGTTCCCTA 16970025
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
||||||||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 16970026 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCC 16970083
Score = 91.5 bits (100), Expect = 3e-16
Identities = 111/155 (72%), Gaps = 26/155 (17%)
Strand=Plus/Minus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
|||||| ||| ||||| |||||||| ||| ||| || |||| |||||||
Sbjct 7379000 GTCTAATCCCTGCTCATGTTCCCTACTAGAGGG----------AATGCTTGGTGAATTCT 7378951
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||||| |||| || |||||| |||||| || ||||||||| |||||||||
Sbjct 7378950 GCTTCACAATGACAGAAAGAGCTGACATCAAAAGATCAAAAA--------GCTATGAAC- 7378900
Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220
| ||||||||||||||||||||||||||
Sbjct 7378899 -------GTCACAAGCCAGTTATCCCTGTGGTAAC 7378872
>seq33
Length=14158232
Score = 165 bits (182), Expect = 1e-38
Identities = 123/143 (86%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101
|||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 10164325 GTAAAACTAATCTGTCTCATGACTGTCT-----CAGCTCACGTTCCCTATCAGTGGGTGA 10164271
Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161
||||||||| |||| |||||||||||| ||||| ||||||||||||| |||||||
Sbjct 10164270 ACAATCCAATGCTTGGTGAATTCTGCTTCACAGTGATA-GAAGAGCCGACATTGAAGGAT 10164212
Query 162 CAAAAAGCAACGTCGCTATGAAC 184
|||||||||| ||| ||||||||
Sbjct 10164211 CAAAAAGCAATGTCTCTATGAAC 10164189
>seq8
Length=24624148
Score = 132 bits (146), Expect = 8e-29
Identities = 122/153 (80%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 74 CCAG-CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132
|||| ||||| |||||||||| ||| |||||| ||| |||| ||||| ||||||
Sbjct 21241430 CCAGTCTCACTTTCCCTATTAATGGATGAACAGGACAATGCTTGGTGAATTTTGCTTCAC 21241371
Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192
|| ||||||||| | || || |||||||||||||| | ||| ||||||| ||||||||
Sbjct 21241370 AATAATAGGAAGAACTGAAATTGAAGGATCAAAAAGTCATGTCACTATGAATGCTTGGCT 21241311
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||||| || | |||||||| || ||||||
Sbjct 21241310 GCCACAAGACAATGATCCCTGTAGTGGCTTTTC 21241278
>seq17
Length=23930735
Score = 131 bits (144), Expect = 3e-28
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 6037292 TCATCAGTAGAGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 6037351
Query 91 TTAGTGGGTGAACAATCCAA 110
||||||||||||||||||||
Sbjct 6037352 TTAGTGGGTGAACAATCCAA 6037371
>seq30
Length=9832349
Score = 111 bits (122), Expect = 3e-22
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215
||||||||||||| ||||| || |||||||||||| |||||||||| ||||||||||||
Sbjct 1240995 AAGGATCAAAAAGTGACGTCACTGTGAACGCTTGGCCGCCACAAGCCGGTTATCCCTGTG 1241054
Query 216 GTAACTTTTCTGGCACCTC 234
|||||||||||| ||||||
Sbjct 1241055 GTAACTTTTCTGACACCTC 1241073
>seq2
Length=38276455
Score = 107 bits (118), Expect = 3e-21
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 17696803 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTA 17696744
Query 91 TTAG 94
||||
Sbjct 17696743 TTAG 17696740
>seq21
Length=11988284
Score = 96.9 bits (106), Expect = 6e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 1166327 TCATCAGTAGGGTAAAACTAACCTGTCTTACGACTGTCTAAACCCAGGTCACGTTCCCTA 1166268
Query 91 TTA 93
|||
Sbjct 1166267 TTA 1166265
>seq27
Length=16183189
Score = 93.3 bits (102), Expect = 7e-17
Identities = 61/66 (92%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||| |||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 14483351 TCATCGGTAGGGTAAAACTAACCTATCTCACGACAGTCT-AACCCAGCTCACGTTCCCTA 14483409
Query 91 TTAGTG 96
||||||
Sbjct 14483410 TTAGTG 14483415
>seq681
Length=8975
Score = 91.5 bits (100), Expect = 3e-16
Identities = 111/155 (72%), Gaps = 26/155 (17%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
|||||| ||| ||||| |||||||| ||| ||| || |||| |||||||
Sbjct 5824 GTCTAATCCCTGCTCATGTTCCCTACTAGAGGG----------AATGCTTGGTGAATTCT 5873
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185
||||| |||| || |||||| |||||| || ||||||||| |||||||||
Sbjct 5874 GCTTCACAATGACAGAAAGAGCTGACATCAAAAGATCAAAAA--------GCTATGAAC- 5924
Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220
| ||||||||||||||||||||||||||
Sbjct 5925 -------GTCACAAGCCAGTTATCCCTGTGGTAAC 5952
>seq107
Length=3409075
Score = 84.2 bits (92), Expect = 4e-14
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||||||||||||||||||| |||||||||||| ||||| | |||||| |||| |
Sbjct 738716 GTCATCAGTAGGGTAAAACTACTCTGTCTCATGACAATCTAATCTGAGCTCATGTTCTTT 738657
Query 90 ATTAGTGGGTGAACAATCCAACGCTT 115
|||||| || |||||| ||| |||
Sbjct 738656 ATTAGTAGGCAAACAATTTAACACTT 738631
>seq19
Length=11319828
Score = 77.0 bits (84), Expect = 6e-12
Identities = 53/60 (88%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||| |||||||||| ||||||||||| ||||||||| ||||| |||||||||
Sbjct 61116 TCATCAGTAAGGTAAAACTAGCCTGTCTCATGCTGGTCTAAACATAGCTCTCGTTCCCTA 61175
>seq3
Length=42050177
Score = 75.2 bits (82), Expect = 2e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCA 76
|||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 22295460 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCA 22295505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854295882816
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