Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5 340 3e-91 seq7719 325 7e-87 seq7014 260 2e-67 seq60 260 2e-67 seq7018 196 8e-48 seq33 165 1e-38 seq8 132 8e-29 seq17 131 3e-28 seq30 111 3e-22 seq2 107 3e-21 seq21 96.9 6e-18 seq27 93.3 7e-17 seq681 91.5 3e-16 seq107 84.2 4e-14 seq19 77.0 6e-12 seq3 75.2 2e-11 >seq5 Length=36382235 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 20418908 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 20418967 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 20418968 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 20419027 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 20419028 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 20419087 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 20419088 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 20419147 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 20419148 CCCCGCTTTCACGGTCTGTATTC 20419170 >seq7719 Length=2002 Score = 325 bits (360), Expect = 7e-87 Identities = 230/263 (87%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1387 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1328 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| Sbjct 1327 TTAGTGGGTGAACAATCCCACGCTTGGTGAATTCTGCTTCAAAATGATAGGAAGAGCCGA 1268 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| Sbjct 1267 CATCGAAGGATCAAAAGGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 1208 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 1207 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 1148 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | || ||| ||| ||||||| Sbjct 1147 CCCCGCTATCACGGTCTGTATTC 1125 >seq7014 Length=15999421 Score = 260 bits (288), Expect = 2e-67 Identities = 180/204 (88%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| Sbjct 14808977 TCATCAGTAGGGTAAAATTAACCTGTCTCATGATGGTCTAATCCCAGCTCACGTTCCCTA 14808918 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||||||||||| |||||||||||||| || Sbjct 14808917 TTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCTGA 14808858 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| || | ||| | || ||||||| ||||||||||||||| | Sbjct 14808857 CATTGAAGGATCAAAAAGTGACATTGCTGTTAATGCTTGGCCACCACAAGCCAGTTATTC 14808798 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| || ||| Sbjct 14808797 CTGTGGTAACTTTTCTGACAACTC 14808774 Score = 87.8 bits (96), Expect = 3e-15 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| |||||||||||||||||| |||||| ||| ||||||||| |||||||| Sbjct 7568908 TCATCAGTAGAGTAAAACTAACCTGTCTCTTGACGGCTTAATCCCAGCTCATGTTCCCTA 7568849 Query 91 TTAGTGGGTGAAC 103 ||| ||| |||| Sbjct 7568848 CTAGCGGG-GAAC 7568837 >seq60 Length=8731434 Score = 260 bits (288), Expect = 2e-67 Identities = 209/251 (83%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| Sbjct 7794139 AAAACTAACCTGTCTCACGACGGTCCAAACCCAGCTCACATTCCCTATTAGTGGGTGAAC 7794080 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||||| ||| |||||||||||| |||||||||||||||| ||||||||| Sbjct 7794079 AATCCAATTCTTGGTGAATTCTGCTTCACAGCACTAGGAAGAGCCGACATTGAAGGATCA 7794020 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 7794019 AAAAGTGACGTCGCTATGAACGCTTGGC-ACCACGGGCCAGTTATCCCTGTGGTAACTTT 7793961 Query 224 TCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283 |||| |||||| || | ||| || | |||||||| ||||| | |||||||| Sbjct 7793960 TCTGACACCTCCTGCTTAAAACCCAACAGGTCAGAAGGATCGTGAGGCCCCGCTTTCATG 7793901 Query 284 GTTTGTATTCA 294 || |||||||| Sbjct 7793900 GTCTGTATTCA 7793890 >seq7018 Length=17465556 Score = 196 bits (216), Expect = 8e-48 Identities = 120/128 (94%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 7839360 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTA 7839301 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 7839300 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 7839241 Query 151 CATCGAAG 158 |||||||| Sbjct 7839240 CATCGAAG 7839233 Score = 163 bits (180), Expect = 5e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||| Sbjct 16969966 TCATCAGTAGGGTCAAACTAACCTGTCTCACGACGGTCCAATCCCAGCTCACGTTCCCTA 16970025 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| Sbjct 16970026 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCC 16970083 Score = 91.5 bits (100), Expect = 3e-16 Identities = 111/155 (72%), Gaps = 26/155 (17%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||| ||| ||||| |||||||| ||| ||| || |||| ||||||| Sbjct 7379000 GTCTAATCCCTGCTCATGTTCCCTACTAGAGGG----------AATGCTTGGTGAATTCT 7378951 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||| |||| || |||||| |||||| || ||||||||| ||||||||| Sbjct 7378950 GCTTCACAATGACAGAAAGAGCTGACATCAAAAGATCAAAAA--------GCTATGAAC- 7378900 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 | |||||||||||||||||||||||||| Sbjct 7378899 -------GTCACAAGCCAGTTATCCCTGTGGTAAC 7378872 >seq33 Length=14158232 Score = 165 bits (182), Expect = 1e-38 Identities = 123/143 (86%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||| Sbjct 10164325 GTAAAACTAATCTGTCTCATGACTGTCT-----CAGCTCACGTTCCCTATCAGTGGGTGA 10164271 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||||||||| |||| |||||||||||| ||||| ||||||||||||| ||||||| Sbjct 10164270 ACAATCCAATGCTTGGTGAATTCTGCTTCACAGTGATA-GAAGAGCCGACATTGAAGGAT 10164212 Query 162 CAAAAAGCAACGTCGCTATGAAC 184 |||||||||| ||| |||||||| Sbjct 10164211 CAAAAAGCAATGTCTCTATGAAC 10164189 >seq8 Length=24624148 Score = 132 bits (146), Expect = 8e-29 Identities = 122/153 (80%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 74 CCAG-CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132 |||| ||||| |||||||||| ||| |||||| ||| |||| ||||| |||||| Sbjct 21241430 CCAGTCTCACTTTCCCTATTAATGGATGAACAGGACAATGCTTGGTGAATTTTGCTTCAC 21241371 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 || ||||||||| | || || |||||||||||||| | ||| ||||||| |||||||| Sbjct 21241370 AATAATAGGAAGAACTGAAATTGAAGGATCAAAAAGTCATGTCACTATGAATGCTTGGCT 21241311 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||| || | |||||||| || |||||| Sbjct 21241310 GCCACAAGACAATGATCCCTGTAGTGGCTTTTC 21241278 >seq17 Length=23930735 Score = 131 bits (144), Expect = 3e-28 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 6037292 TCATCAGTAGAGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 6037351 Query 91 TTAGTGGGTGAACAATCCAA 110 |||||||||||||||||||| Sbjct 6037352 TTAGTGGGTGAACAATCCAA 6037371 >seq30 Length=9832349 Score = 111 bits (122), Expect = 3e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||| ||||| || |||||||||||| |||||||||| |||||||||||| Sbjct 1240995 AAGGATCAAAAAGTGACGTCACTGTGAACGCTTGGCCGCCACAAGCCGGTTATCCCTGTG 1241054 Query 216 GTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| Sbjct 1241055 GTAACTTTTCTGACACCTC 1241073 >seq2 Length=38276455 Score = 107 bits (118), Expect = 3e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 17696803 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTA 17696744 Query 91 TTAG 94 |||| Sbjct 17696743 TTAG 17696740 >seq21 Length=11988284 Score = 96.9 bits (106), Expect = 6e-18 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 1166327 TCATCAGTAGGGTAAAACTAACCTGTCTTACGACTGTCTAAACCCAGGTCACGTTCCCTA 1166268 Query 91 TTA 93 ||| Sbjct 1166267 TTA 1166265 >seq27 Length=16183189 Score = 93.3 bits (102), Expect = 7e-17 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| Sbjct 14483351 TCATCGGTAGGGTAAAACTAACCTATCTCACGACAGTCT-AACCCAGCTCACGTTCCCTA 14483409 Query 91 TTAGTG 96 |||||| Sbjct 14483410 TTAGTG 14483415 >seq681 Length=8975 Score = 91.5 bits (100), Expect = 3e-16 Identities = 111/155 (72%), Gaps = 26/155 (17%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||| ||| ||||| |||||||| ||| ||| || |||| ||||||| Sbjct 5824 GTCTAATCCCTGCTCATGTTCCCTACTAGAGGG----------AATGCTTGGTGAATTCT 5873 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||||| |||| || |||||| |||||| || ||||||||| ||||||||| Sbjct 5874 GCTTCACAATGACAGAAAGAGCTGACATCAAAAGATCAAAAA--------GCTATGAAC- 5924 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 | |||||||||||||||||||||||||| Sbjct 5925 -------GTCACAAGCCAGTTATCCCTGTGGTAAC 5952 >seq107 Length=3409075 Score = 84.2 bits (92), Expect = 4e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||| |||||||||||| ||||| | |||||| |||| | Sbjct 738716 GTCATCAGTAGGGTAAAACTACTCTGTCTCATGACAATCTAATCTGAGCTCATGTTCTTT 738657 Query 90 ATTAGTGGGTGAACAATCCAACGCTT 115 |||||| || |||||| ||| ||| Sbjct 738656 ATTAGTAGGCAAACAATTTAACACTT 738631 >seq19 Length=11319828 Score = 77.0 bits (84), Expect = 6e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||| ||||||||||| ||||||||| ||||| ||||||||| Sbjct 61116 TCATCAGTAAGGTAAAACTAGCCTGTCTCATGCTGGTCTAAACATAGCTCTCGTTCCCTA 61175 >seq3 Length=42050177 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCA 76 |||||||||||||||||||||||||||||| || |||||||||||| Sbjct 22295460 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCA 22295505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854295882816