Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 1e-15 >seq1 Length=54145758 Score = 89.7 bits (98), Expect = 1e-15 Identities = 179/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || || || | || ||||||||||||| Sbjct 38015722 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ATCTGAGATT-ACACAGTAACAGGTCTGTG 38015779 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || |||||||| | |||| |||| | |||||||||||| ||| | | ||| Sbjct 38015780 TTGTCCTTAGATATCTGGGGCTGCACACTTGCTACACTGACA-AGCTCAGCTCTGTGTCA 38015838 Query 191 CCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCGTGCTGGGGATAGAGCAT 248 ||| ||| | | ||| ||| | |||| |||| | | ||| ||||||| || | Sbjct 38015839 GCTTATGCCAGCTTGCATGGCTAA-CCTGTTGAACTGCGTTTGTGATGGGGATTTAGGAC 38015897 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||||| | | || ||||||| || |||||| || ||||| || || || || Sbjct 38015898 AGCAATTATTCCCTATGAATGAGGAATTCCCAGTAAGTGCAAGTCATGAGATCGTGTCGA 38015957 Query 309 TTACGTCCCTGCCCTT 324 | | |||||| ||||| Sbjct 38015958 TAAAGTCCCTCCCCTT 38015973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947084574208