Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 1e-15
>seq1
Length=54145758
Score = 89.7 bits (98), Expect = 1e-15
Identities = 179/256 (70%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || || || | || |||||||||||||
Sbjct 38015722 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ATCTGAGATT-ACACAGTAACAGGTCTGTG 38015779
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|| |||||||| | |||| |||| | |||||||||||| ||| | | |||
Sbjct 38015780 TTGTCCTTAGATATCTGGGGCTGCACACTTGCTACACTGACA-AGCTCAGCTCTGTGTCA 38015838
Query 191 CCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCGTGCTGGGGATAGAGCAT 248
||| ||| | | ||| ||| | |||| |||| | | ||| ||||||| || |
Sbjct 38015839 GCTTATGCCAGCTTGCATGGCTAA-CCTGTTGAACTGCGTTTGTGATGGGGATTTAGGAC 38015897
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||||| | | || ||||||| || |||||| || ||||| || || || ||
Sbjct 38015898 AGCAATTATTCCCTATGAATGAGGAATTCCCAGTAAGTGCAAGTCATGAGATCGTGTCGA 38015957
Query 309 TTACGTCCCTGCCCTT 324
| | |||||| |||||
Sbjct 38015958 TAAAGTCCCTCCCCTT 38015973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947084574208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |