Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq109 136 1e-29
seq2 104 8e-20
seq6 82.4 2e-13
>seq109
Length=1397345
Score = 136 bits (150), Expect = 1e-29
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437
|||||| || ||||||| | | ||| || |||||||||| | | ||||||||||||||
Sbjct 197146 AATCTCATTTGTCCATTCCTACAGGTCCCTGATTAGATGACAAAGTATTTGGCTACCTTA 197087
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
||||| | |||||||||| ||| |||| | | | | |||||||||||||||||||||
Sbjct 197086 AGAGAATTGTAGTTACTCCTGCCATTTATTCACACATCATTGAATTTCTTCACTTTGACA 197027
Query 498 TTCAGAGCACTGGGCAGAAATCA 520
||||| |||||||| |||| |||
Sbjct 197026 TTCAGGGCACTGGGTAGAAGTCA 197004
>seq2
Length=38276455
Score = 104 bits (114), Expect = 8e-20
Identities = 62/65 (95%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 25125601 GTTCATCCATTCATGCGCGTCACTAATAAGATGACGAGGCATTTGGCTACCTTAACAGAG 25125542
Query 444 TCATA 448
|||||
Sbjct 25125541 TCATA 25125537
>seq6
Length=19821728
Score = 82.4 bits (90), Expect = 2e-13
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|| ||||| | |||| |||||| |||| |||| |||||||||||||| ||||
Sbjct 2654860 TTCTGCTCCAAGGGAGGTTTCTGGCCTCCCTGAGCTTGCCTTAGGACACCTGTGTTACAC 2654801
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117
||| |||| ||| ||||||| | |||||| ||||||||| |||| |||
Sbjct 2654800 TTTGACAGGTGTACCGCCCCGGTCAAACTTCCCACCTGATGTTGTCCTCA 2654751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635000734528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |