Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq109 136 1e-29 seq2 104 8e-20 seq6 82.4 2e-13 >seq109 Length=1397345 Score = 136 bits (150), Expect = 1e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||| || ||||||| | | ||| || |||||||||| | | |||||||||||||| Sbjct 197146 AATCTCATTTGTCCATTCCTACAGGTCCCTGATTAGATGACAAAGTATTTGGCTACCTTA 197087 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||| | |||||||||| ||| |||| | | | | ||||||||||||||||||||| Sbjct 197086 AGAGAATTGTAGTTACTCCTGCCATTTATTCACACATCATTGAATTTCTTCACTTTGACA 197027 Query 498 TTCAGAGCACTGGGCAGAAATCA 520 ||||| |||||||| |||| ||| Sbjct 197026 TTCAGGGCACTGGGTAGAAGTCA 197004 >seq2 Length=38276455 Score = 104 bits (114), Expect = 8e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 25125601 GTTCATCCATTCATGCGCGTCACTAATAAGATGACGAGGCATTTGGCTACCTTAACAGAG 25125542 Query 444 TCATA 448 ||||| Sbjct 25125541 TCATA 25125537 >seq6 Length=19821728 Score = 82.4 bits (90), Expect = 2e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| | |||| |||||| |||| |||| |||||||||||||| |||| Sbjct 2654860 TTCTGCTCCAAGGGAGGTTTCTGGCCTCCCTGAGCTTGCCTTAGGACACCTGTGTTACAC 2654801 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 ||| |||| ||| ||||||| | |||||| ||||||||| |||| ||| Sbjct 2654800 TTTGACAGGTGTACCGCCCCGGTCAAACTTCCCACCTGATGTTGTCCTCA 2654751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635000734528