Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq7018 96.9 6e-18
>seq7018
Length=17465556
Score = 96.9 bits (106), Expect = 6e-18
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 7839389 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCACT 7839446
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 7839447 GGAGCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 7839498
Score = 75.2 bits (82), Expect = 2e-11
Identities = 80/103 (78%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62
|||||||||||||| | |||||| | ||||| | || | || |||| || || ||
Sbjct 16969935 ACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCACTGG 16969878
Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105
|| | ||||||||||| |||||||||||||| |||||||||
Sbjct 16969877 AGCAAGGCTACCATCTGTGGGATTATGGCTGAATGCCTCTAAG 16969835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819103291904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |