Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 91.5 1e-13 >seq2 Length=38276455 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||| | | || || ||||||||||| |||||||||| Sbjct 2052620 TGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGA 2052561 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| ||| | || || || ||||||||| |||| || || |||||||||| Sbjct 2052560 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTAATTGACACGTACATCA 2052504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| ||||| || || || ||||| | ||||| ||| |||| | || Sbjct 2053557 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCTATCCAGTACCATGAC 2053498 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| |||||||| ||||| || |||||||||||||||| ||||||||| Sbjct 2053497 ATCTGGCGGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 2053445 >seq1 Length=54145758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||||||||| ||| ||||| Sbjct 8042192 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATCCTCATTGAGAAC 8042251 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||||||||||||||| | || || || || ||||||| Sbjct 8042252 GTTCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 8042294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397508954443040