Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
seq1 91.5 1e-13
>seq2
Length=38276455
Score = 104 bits (114), Expect = 2e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || |||||| | | || || ||||||||||| ||||||||||
Sbjct 2052620 TGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGA 2052561
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|||||||||| ||| | || || || ||||||||| |||| || || ||||||||||
Sbjct 2052560 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTAATTGACACGTACATCA 2052504
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || ||| ||||| || || || ||||| | ||||| ||| |||| | ||
Sbjct 2053557 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCTATCCAGTACCATGAC 2053498
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| ||||| |||||||| ||||| || |||||||||||||||| |||||||||
Sbjct 2053497 ATCTGGCGGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 2053445
>seq1
Length=54145758
Score = 91.5 bits (100), Expect = 1e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| | | || || ||||||||||| ||||||||||| ||| |||||
Sbjct 8042192 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATCCTCATTGAGAAC 8042251
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||||||||||||||||| | || || || || |||||||
Sbjct 8042252 GTTCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 8042294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397508954443040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |