Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq7521 98.7 4e-15 seq822 98.7 4e-15 >seq7521 Length=4263 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 |||||| || | || | ||||| |||||||||||||| | |||||||| ||||||| Sbjct 455 CTCCTTCAGCCGCGGGACCCCCAGCGTCACGTTCTTGGCTGACACGCCGGCGTAGTGGAA 396 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| ||||| || | | |||| | || ||| || || Sbjct 395 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCCCCCAGGGACTGCGCTGCCAGGGCACCCAC 336 Query 349204 CATCTCGCCGGG 349215 |||||||||||| Sbjct 335 CATCTCGCCGGG 324 >seq822 Length=1639 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 |||||| || | || | ||||| |||||||||||||| | |||||||| ||||||| Sbjct 1481 CTCCTTCAGCCGCGGGACCCCCAGCGTCACGTTCTTGGCTGACACGCCGGCGTAGTGGAA 1422 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| ||||| || | | |||| | || ||| || || Sbjct 1421 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCCCCCAGGGACTGCGCTGCCAGGGCACCCAC 1362 Query 349204 CATCTCGCCGGG 349215 |||||||||||| Sbjct 1361 CATCTCGCCGGG 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084405764206428