Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 98.7 4e-15
seq822 98.7 4e-15
>seq7521
Length=4263
Score = 98.7 bits (108), Expect = 4e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
|||||| || | || | ||||| |||||||||||||| | |||||||| |||||||
Sbjct 455 CTCCTTCAGCCGCGGGACCCCCAGCGTCACGTTCTTGGCTGACACGCCGGCGTAGTGGAA 396
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
||| | |||||||| ||||||| ||||| || | | |||| | || ||| || ||
Sbjct 395 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCCCCCAGGGACTGCGCTGCCAGGGCACCCAC 336
Query 349204 CATCTCGCCGGG 349215
||||||||||||
Sbjct 335 CATCTCGCCGGG 324
>seq822
Length=1639
Score = 98.7 bits (108), Expect = 4e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
|||||| || | || | ||||| |||||||||||||| | |||||||| |||||||
Sbjct 1481 CTCCTTCAGCCGCGGGACCCCCAGCGTCACGTTCTTGGCTGACACGCCGGCGTAGTGGAA 1422
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
||| | |||||||| ||||||| ||||| || | | |||| | || ||| || ||
Sbjct 1421 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCCCCCAGGGACTGCGCTGCCAGGGCACCCAC 1362
Query 349204 CATCTCGCCGGG 349215
||||||||||||
Sbjct 1361 CATCTCGCCGGG 1350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084405764206428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |