Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq51217 259 8e-67 seq9624 219 7e-55 seq26455 161 2e-37 seq831 154 3e-35 seq50178 96.9 6e-18 seq20705 80.6 5e-13 >seq51217 Length=17064 Score = 259 bits (286), Expect = 8e-67 Identities = 215/263 (82%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||| ||| Sbjct 8508 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACAGTCTAAGCCCAGCTCATGTTCTCTA 8567 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||| ||||||| || |||||||||||| |||||||||||||| || Sbjct 8568 TTAGTGGGTGAACTATCCAACATTTGGTGAATTCTGCTTCACGATGATAGGAAGAGCTGA 8627 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || |||||||||||||| |||| ||| |||||||||||| |||||||| |||||||| Sbjct 8628 CACTGAAGGATCAAAAAGTGACGTTGCTGTGAACGCTTGGCCACCACAAGCAAGTTATCC 8687 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | || |||| ||| Sbjct 8688 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAAGATCATGAGG 8747 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | | |||| ||| ||||||| Sbjct 8748 CCCCGCCTTCACGGTCTGTATTC 8770 >seq9624 Length=185824 Score = 219 bits (242), Expect = 7e-55 Identities = 172/205 (84%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| |||||||||||||| ||| |||| |||| ||||||||||||| |||| Sbjct 71038 TCATTAGTAGCATAAAACTAACCTGTTTCACAACGGCCTAATCCCAGCTCACGTTTCCTA 70979 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| |||||||| |||||| |||| |||||||||||| ||||||||||||||| | Sbjct 70978 ATAGCGGGTGAACTATCCAATGCTT---GAATTCTGCTTCACAATGATAGGAAGAGCCAA 70922 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||| || | ||| ||||||||||||||| | ||||| ||||||||| Sbjct 70921 CATCGAAGGATCAAACGGCGATGTCACTATGAACGCTTGGCCACTACAAGACAGTTATCC 70862 Query 211 CTGTGGTAACTTTTCTGGCACCTCT 235 ||||| |||||| ||| ||||||| Sbjct 70861 CTGTGAGAACTTTACTGACACCTCT 70837 >seq26455 Length=11908 Score = 161 bits (178), Expect = 2e-37 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 985 GATAGGAAGAGCTGACATGGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCC 926 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||||||||||||||||| |||||| Sbjct 925 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 887 >seq831 Length=7553 Score = 154 bits (170), Expect = 3e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 2312 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACAGTCTAACCCCAGCTCACGTTCCCTA 2253 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||| ||||||||||| |||||||||||| Sbjct 2252 TTAGTGGGTGAACTATCCAACGCTTGGTGAATTCTGCTTC 2213 >seq50178 Length=36318 Score = 96.9 bits (106), Expect = 6e-18 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||| |||||||||||||||||||||||| | ||| || |||| |||| ||||||| Sbjct 10766 TCCTCATTAGGGTAAAACTAACCTGTCTCATAATGGTTTAG-CCCAACTCAGATTCCCTA 10824 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 ||||||||||||||||||| | ||| ||||| Sbjct 10825 TTAGTGGGTGAACAATCCAGCTCTTGGTGAATT 10857 >seq20705 Length=29405 Score = 80.6 bits (88), Expect = 5e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||||||||| |||| | ||||| |||||||||| ||||||| Sbjct 12444 TCATCAGTAGCATAAAACTAACCTGCCTCACAGCAGTCTAGACCCAGCTCATGTTCCCTG 12385 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 12384 TTAGTGGGGGAA 12373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853869229632