Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tyto_20alba_20[refseq_20GCF_5F000687205.1_202014-05-08] 62,122 sequences; 1,120,143,088 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq12271 167 7e-39 seq52108 156 1e-35 seq35441 77.0 1e-11 >seq12271 Length=53543 Score = 167 bits (184), Expect = 7e-39 Identities = 173/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||| |||||| ||| || |||||| ||||||| ||||| | ||||||||||| Sbjct 433 CTCATTTCAATTAAAAGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTCC 374 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||| ||| |||||||||||| ||||||||||||||||||| |||| ||| | ||| Sbjct 373 CCGGGTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGAAGTGGCAGCTGCTTC 314 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 || ||||||| |||| |||||||||||| |||||| || ||||| | ||| | ||| Sbjct 313 TCGGGCTCCCCCTCCCGAATCGAACCCTGATTCCCTGTCCCCCGTGGTCACCCCAGCAGG 254 Query 183 CCACTATC-CTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 ||| | |||| | |||||| |||||||| ||| ||| Sbjct 253 -CACAGGCAGCACCACCAGCAGTTGACAGGGCAGACATTCGAA 212 >seq52108 Length=101371 Score = 156 bits (172), Expect = 1e-35 Identities = 178/236 (75%), Gaps = 11/236 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || ||||||| ||||||| || | || ||| | |||| ||||| ||| | ||||| Sbjct 26393 GTGCTCATTCTAATTACAGAGCCTCAGAAGTGTT-TGTAGTGTTATTT-TTGCCTCTACC 26336 Query 60 TCCCCGTGTCGGGA--------TTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 |||| | ||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 26335 TCCCTGGGTCGGGAGTGGGTAATTGGGTAATTTGCATGCCTGATGCCTTCCTTGGATGTG 26276 Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171 ||| || || |||||||||||||| ||||||||||||| | ||| ||||| | | | Sbjct 26275 GTAACCATTCTTCAGGCTCCCTCTCTGGAATCGAACCCTGAATCCTTGTTACTCATGGTC 26216 Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || ||||| | || |||| ||||||||||||||||| |||| || || Sbjct 26215 ACCGTGATAGGCATAGACAGTATCATCAAAAGTTGATAGGGCAGACATTTAAACGA 26160 >seq35441 Length=121506 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 38779 TACTTAGACATGCATGGCTTAAGCTTTGAGACAAGCATATGA-TACTGGTAG 38729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509461709312