Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5527 298 2e-78 seq9251 208 3e-51 seq645 80.6 1e-12 seq972 75.2 5e-11 >seq5527 Length=203 Score = 298 bits (330), Expect = 2e-78 Identities = 171/175 (98%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 509 GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTG 568 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTG 137 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 77 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 76 GGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 22 >seq9251 Length=294 Score = 208 bits (230), Expect = 3e-51 Identities = 208/264 (79%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 265 GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGG 324 |||||||||||| | || || ||||||| || ||||||| || | |||| | Sbjct 261 GGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCTCGGTAAG 203 Query 325 TGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCCGGCTAGG 382 | |||||||| | || |||| | ||| || ||||||||| | ||| | | | ||| Sbjct 202 TATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAAGTCAAGG 145 Query 383 ATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATC 442 |||||||| |||||||| || || |||||||||| |||||||||||||||||||||| || Sbjct 144 ATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTC 85 Query 443 TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGG-TGGGAAC 501 ||||||||||||||||||| |||||| | ||||||||||||||||||| ||| |||| | Sbjct 84 TATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGTTGGGGCC 25 Query 502 CCGTGAG-GGTGCACCATCGACCG 524 || || ||||||| |||||||| Sbjct 24 TCGCAAGAGGTGCACAATCGACCG 1 >seq645 Length=3212271 Score = 80.6 bits (88), Expect = 1e-12 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || |||||| | | ||||| | ||||| Sbjct 1591025 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGTTAAAT 1591084 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||||||||| |||||||| | | ||||| |||||| | |||| Sbjct 1591085 ACTGGCACAAGACCGATAGCCCACAAGTACCATAAGGGAAAGCTGAAAAAAAGTTTG 1591141 >seq972 Length=1254860 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||| ||| ||||| ||| ||||||||||||||||| | ||||||||||| | || Sbjct 97009 AGATGATGAGCTATGGCTGGGCAGGGTGAAGCCAGAGGACATTCTGGTGGAGGTCTGTAG 96950 Query 638 CGGTTCTGGCGTGCAAATCGATCGTC 663 | || ||| |||||||| | ||||| Sbjct 96949 CAGTCCTGATGTGCAAATTGGTCGTC 96924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079550601050