Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1245 219 7e-55 seq326 107 3e-21 >seq1245 Length=668848 Score = 219 bits (242), Expect = 7e-55 Identities = 202/252 (80%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | |||||| | ||||||||||||||||||||||||||||||| | Sbjct 458082 GTCAGTGTAGCGCACACACGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 458024 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| | ||||| | |||| | ||||| ||||||||| | | ||||| | || Sbjct 458023 CAATCTTGGGT-GGCTGAACGCCACTTGTCCCCCTAAGAAGCTGGACGCCAAC--TGCTC 457967 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | ||||||||||||| ||||||||||| | Sbjct 457966 G--GGGGTCGCATAACTAGTTAGCATGCCAGTCTCTCGTTCGTTATTGGAATTAACCACA 457909 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 457908 CAAGTCGCTCCACCAACTAAGAACGGCCATGCAACACCACCCACGGAATCAAGAAAGAGC 457849 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 457848 TCTCAATCTGTC 457837 >seq326 Length=436358 Score = 107 bits (118), Expect = 3e-21 Identities = 155/216 (72%), Gaps = 16/216 (7%) Strand=Plus/Minus Query 48 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCT 107 ||| ||||||||||||| || |||| || | |||| | |||| | |||| | |||||| Sbjct 115540 AAGAGCATCACAGACCTCTTGTTGC-TCTA-CTTCATGTTGCTGAATGCCACTTGTCCCT 115483 Query 108 CTAAGAAGCCAGCCACCAACCATAGTCGATGGGG-------CTATTTAGCAGGTTAAGGT 160 ||||| | || |||||| | | |||| ||| |||||| | | || Sbjct 115482 TGAAGAATTTGGACATCAACCACTG---AGGGGGTGCATAACTAGTTAGCATGCCACAGT 115426 Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 | ||| ||||| |||| ||||||||||||||||| | || ||||| ||| | |||| Sbjct 115425 ATTGTTTGTTATTGGAAATAACCAGACAAATCACTGC----ACAAAGAATGGCAAGGCAC 115370 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 || ||||| | |||| |||||||||| |||||||| Sbjct 115369 CATCACCCGTGGAATTTAGAAAGAGCTCTCAATCTG 115334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796638279231