Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq955 107 3e-21 seq626 93.3 7e-17 seq215 91.5 3e-16 seq28 77.0 6e-12 seq13782 73.4 7e-11 seq771 73.4 7e-11 >seq955 Length=1263160 Score = 107 bits (118), Expect = 3e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||| || | |||||||| |||||||||||||||| ||||||| |||||| Sbjct 62868 AAGGATCAAAAAGTGACATTGCTATGAATGCTTGGCTGCCACAAGTCAGTTATGCCTGTG 62927 Query 216 GTAACTTTTCTGGCACCTC 234 |||||||||||| |||||| Sbjct 62928 GTAACTTTTCTGACACCTC 62946 >seq626 Length=548247 Score = 93.3 bits (102), Expect = 7e-17 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||| ||||||| ||||| |||||| ||||| |||||| || Sbjct 372632 ATCAGTAGGGTAAAACTAACCTACCTCATGATGGTCT-AACCCAACTCACATTCCCTGTT 372574 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATT 123 || |||||| |||||| |||| ||||| Sbjct 372573 AGCAGGTGAAAAATCCAGTGCTTGATGAATT 372543 >seq215 Length=6142128 Score = 91.5 bits (100), Expect = 3e-16 Identities = 180/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||| |||||||||| || | ||| | |||||||| |||||| |||| | Sbjct 1537781 TCATCAGGAGGATAAAACTAACTTGCTTAATGGCAGTCTAAACGCAGCTCGTGTTCATTG 1537722 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||| || ||||| ||| | ||| || ||| || ||||| |||| | Sbjct 1537721 TTAATGGGTAAATCGACCAACACTTGGC--ATTTTGT---GGT--GACAGGAAAAGCCCA 1537669 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| || | | || | ||| | |||| | ||||||||| || | |||| || Sbjct 1537668 CATGAAAAGGTTGAA--GTAACTTTGCTAATAG---TTGGCTGCCCCAGGGTAGTTTTCT 1537614 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||||| || |||| || | ||| | || | | | | |||| || Sbjct 1537613 CTGTGGTAACTTTTCTATCATCTCTTGCTTAAAACCTAGAAAGTC-AGAAGATCCTGAGA 1537555 Query 271 CCACACTTTCATGGTTTGTAT 291 ||||||| ||||| ||||| Sbjct 1537554 CCACACTAGCATGGCCTGTAT 1537534 >seq28 Length=3161224 Score = 77.0 bits (84), Expect = 6e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| | |||| |||||||||||||||| ||||| |||||||||||| |||||| Sbjct 1085172 TCATCAGTAAGATAAATCTAACCTGTCTCATGATGGTCT-AACCCAGCTCACATTCCCTC 1085114 Query 91 TT 92 || Sbjct 1085113 TT 1085112 >seq13782 Length=626 Score = 73.4 bits (80), Expect = 7e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| || || |||||||||||||||||||||||||||||| Sbjct 562 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 621 Query 61 TGACG 65 |||| Sbjct 622 CGACG 626 >seq771 Length=2633480 Score = 73.4 bits (80), Expect = 7e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGC 78 |||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 1294381 TCATCAGTAGGGTAAAACTAACCTGTCTCACGATGATCTAAACCCAGC 1294334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854220994656