Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1821 185 3e-44 seq389 161 3e-37 seq224 136 1e-29 seq311 77.0 1e-11 >seq1821 Length=150414 Score = 185 bits (204), Expect = 3e-44 Identities = 158/196 (81%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| ||||||||||||||| |||| |||||| | |||||| || |||||| Sbjct 5421 CTCCCATTTATTCTACACCTCTGAAGTATCTTCACAGCACCAGACTAGGGTTGTGCTCAA 5362 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| |||||| |||| ||||||||||||||| || | Sbjct 5361 CAGGGTCTTCTTTCCCTGCTGATTCTTTCAAGCCTGTTCTCTTGGCTGTGGTTTCACTGG 5302 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| |||||||||||| ||| |||||||||||| ||||||||| |||| Sbjct 5301 CTAGTAAGTAGGGACAGTGG-------GTTCATCCATTCATGCATATCACTAATTGGATG 5249 Query 417 ACGAGGCATTTGGCTA 432 | |||||||||||||| Sbjct 5248 ATGAGGCATTTGGCTA 5233 >seq389 Length=1250436 Score = 161 bits (178), Expect = 3e-37 Identities = 152/193 (79%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||| |||| | | ||| |||||| | ||| ||||| || |||||| Sbjct 356846 CCACTTATTCTATACCTTTTATGTCTCTTCACAGCACCAAACTGGAGTCTTGCCCAACAG 356905 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||| ||| |||||||| ||| || ||| |||||||||||||||| || || Sbjct 356906 GGTCTT---TCCTTGCTGATTCTACCACACCTGTTTCCTTGGCTGTGGTTTCACTGGAGG 356962 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||| |||||||| | ||||||| ||| ||||||||||| | |||||||||||||||| Sbjct 356963 GTAGGTAGGGACAATAGGAATCTTGTTCATCCATTCATGTACATCACTAATTAGATGACA 357022 Query 420 AGGCATTTGGCTA 432 |||||||||| || Sbjct 357023 AGGCATTTGGTTA 357035 >seq224 Length=889526 Score = 136 bits (150), Expect = 1e-29 Identities = 121/149 (81%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||| ||||||||||||| ||||||||| || |||| || ||||| Sbjct 513306 GAGTCAAGCTCAACAAGGTCTTCTTTCCCTGCTGATTCCACCCAGCCTCTT----TGGCT 513251 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||| || |||||||| |||||||||| |||||||| || | |||||| || | Sbjct 513250 GTGGTTTCACTGGATAGTAGGTAGGGACAGTAGGAATCTCATTCTTTGGTTCATGTGCAT 513191 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 ||| || ||||| ||||||||||||| Sbjct 513190 CAC--AT--CATGACAAGGCATTTGGCTA 513166 >seq311 Length=1989962 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 49 TAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||||| |||| |||||| ||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 127637 TAGGACGCCTGTGTTATGCTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCA 127696 Query 109 ATGTC 113 |||| Sbjct 127697 CTGTC 127701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634857409248