Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1 152 9e-35 >seq1 Length=45240865 Score = 152 bits (168), Expect = 9e-35 Identities = 159/205 (78%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| | ||||||||| | | ||||| |||||||||| | ||||| Sbjct 41590087 TCATCAGTAGG-TAAAACCACCCTGTCTCACAAAGATCTAATCCCAGCTCACATCCCCTA 41590145 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | | | ||| |||||||| |||| |||||||||||| ||| ||||||||| Sbjct 41590146 TCATAG--TGAGCAATCCAATGCTTGGTGAATTCTGCTTCCCAATGGCGGGAAGAGCCAC 41590203 Query 151 CATCGAAGGATCAAAAAGCAACGTCGC-TATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 || |||| |||||||||||| | || ||||| | |||||||||||||||||||| | Sbjct 41590204 GATGAAAGGCTCAAAAAGCAACATTGCTTATGAGCACTTGGCTGCCACAAGCCAGTCCCC 41590263 Query 210 CCTGTGGTAACTTTTCTGGCACCTC 234 |||| | ||||||| || ||||| Sbjct 41590264 CCTGCGTTAACTTTCCTCATACCTC 41590288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854348582208