Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1410 266 1e-68
seq1712 264 4e-68
seq3320 233 6e-59
seq276 188 2e-45
seq883 168 2e-39
seq3233 158 4e-36
seq1464 152 2e-34
seq658 118 3e-24
seq3384 107 6e-21
seq2126 104 8e-20
seq2997 96.9 1e-17
seq5 77.0 1e-11
>seq1410
Length=16747
Score = 266 bits (294), Expect = 1e-68
Identities = 177/197 (90%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||
Sbjct 7381 GCTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCA 7322
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 7321 ACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCTGTTCCCTTTGCTGTGGTTTCGCTG 7262
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|||||||| ||||||||||||||||||| || |||||||||||| | |||||||||||||
Sbjct 7261 GATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCACATCACTAATTAGAT 7202
Query 416 GACGAGGCATTTGGCTA 432
|| | ||||| |||||
Sbjct 7201 GATGTAGCATTAGGCTA 7185
Score = 134 bits (148), Expect = 5e-29
Identities = 92/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|| ||||| |||||||||||| ||||| ||| || || || ||| |||||||||||||
Sbjct 16539 CTGCCTTAGGAGAGTCATAGTCACTCCTGCCACTTGCCTGCACTTCATTGAATTTCTTCA 16598
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 16599 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCATCAACA 16642
>seq1712
Length=4852
Score = 264 bits (292), Expect = 4e-68
Identities = 155/161 (96%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 60
Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399
||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 61 GGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC 120
Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440
||||||||||||||||||||||||||||||||| ||| ||
Sbjct 121 GCGTCACTAATTAGATGACGAGGCATTTGGCTATATTACGA 161
Score = 168 bits (186), Expect = 2e-39
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4696 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 4755
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 4756 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 4796
>seq3320
Length=3091
Score = 233 bits (258), Expect = 6e-59
Identities = 170/197 (86%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||| ||| ||||||||||||||||| | | || ||| | || ||||||||||||||
Sbjct 1952 GCTACCATTTATTCTACACCTCTCATGACTCTTTACAGCACCAGATTAGAGTCAAGCTCA 1893
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
|||||||||||||||||| |||||||| ||||||| |||||||| |||| |||||||||
Sbjct 1892 ACAGGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGTTCCCTTTGCTGAGGTTTCGCTG 1833
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1832 GATAGTAGGTAGAGACAGTGGGAATCTCGTTCATCCATTCATGCACATCACTAATTAGAT 1773
Query 416 GACGAGGCATTTGGCTA 432
||| |||||| |||||
Sbjct 1772 GACATGGCATTAGGCTA 1756
>seq276
Length=453455
Score = 188 bits (208), Expect = 2e-45
Identities = 166/206 (81%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||| || ||||||||||| ||| ||||| | | || | || ||||||| |
Sbjct 431492 CTCCCACTTTTTTTACACCTCTCATGTCTCCTCACAGTGCCACACCAAAGGCAAGCTCCA 431551
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| ||||| ||||| ||||||||| ||||||| ||| |||||||||| ||| |
Sbjct 431552 TAGGTTCTTCCTTCCCTGCTGATTCCACCAAGCCTGTT-----GGCTGTGGTTGGGCTGG 431606
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||| || ||||| |||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 431607 ATAGCAGGTAGGGGCAGTGGGAATCTCGTTCGTCCATTCATACTTGTCACTAATTAGATG 431666
Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442
|||||||||||||||| ||||| ||
Sbjct 431667 ACGAGGCATTTGGCTA-TTTAAGGGA 431691
>seq883
Length=56780
Score = 168 bits (186), Expect = 2e-39
Identities = 127/149 (85%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||||||| ||| |||||||| ||||| || ||||||||||||||||
Sbjct 9365 CAGGCTCAACAAGGTCTTCTTCCCCTGCTGATTCTGCCAAACCTGTTCCCTTGGCTGTGG 9424
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403
|||| || |||||||| ||||||| |||||||||| ||| || | ||||| | |||
Sbjct 9425 TTTCACTGGATAGTAGGTAGGGACTGTGGGAATCTTGTTCATTCATTTATTCACTCACGT 9484
Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||| ||||||||||||||
Sbjct 9485 CACTAATTAGATGATGAGGCATTTGGCTA 9513
Score = 113 bits (124), Expect = 1e-22
Identities = 101/126 (80%), Gaps = 7/126 (6%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| ||||||| ||| ||| |||||||||||||||
Sbjct 29289 CAGGCTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 29232
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||| ||| |||||| | | |||||||| ||||||| || |||||||||| |||||
Sbjct 29231 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT-----TCACT 29177
Query 408 AATTAG 413
| ||||
Sbjct 29176 ATTTAG 29171
Score = 113 bits (124), Expect = 1e-22
Identities = 101/126 (80%), Gaps = 7/126 (6%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| ||||||| ||| ||| |||||| ||||||||
Sbjct 39718 CAGGCTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTGGGCTGTGG 39661
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||| ||| |||||| | | |||||||| |||||||||| |||||||||| |||||
Sbjct 39660 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCGTTCATCCATTCAT-----TCACT 39606
Query 408 AATTAG 413
| ||||
Sbjct 39605 ATTTAG 39600
>seq3233
Length=3231
Score = 158 bits (174), Expect = 4e-36
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
|||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1701 CTTAAGAGAGTCATAGCTACTCCCGCCGTTTACCCGCGCTTCATTGAAGTTCTTCACTTT 1760
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||| ||||||
Sbjct 1761 GACATTCAGAGCACTGGGCAGAAATCACATTGCATCAACA 1800
>seq1464
Length=14228
Score = 152 bits (168), Expect = 2e-34
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 92 TTAAGAGAGTCATAGCTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 33
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGC 526
||||||||||||||||||||||||||||||||
Sbjct 32 ACATTCAGAGCACTGGGCAGAAATCACATTGC 1
>seq658
Length=101349
Score = 118 bits (130), Expect = 3e-24
Identities = 93/110 (85%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| |||||||| ||| ||| |||||||||||||||
Sbjct 44955 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 44897
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||| ||| |||||| | | |||||||| |||||||||| ||||||||||
Sbjct 44896 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCGTTCATCCATTCAT 44847
Score = 107 bits (118), Expect = 6e-21
Identities = 100/126 (79%), Gaps = 6/126 (5%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| |||||||| ||| ||| |||||||||||||||
Sbjct 51003 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 50945
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||| | | |||||| | | |||||||| ||| ||| || |||||||||| |||||
Sbjct 50944 TTTTGATGGATAGTGGGTCAGGACAGTGAGAACCTCCTTCATCCATTCAT-----TCACT 50890
Query 408 AATTAG 413
| ||||
Sbjct 50889 ATTTAG 50884
>seq3384
Length=2756
Score = 107 bits (118), Expect = 6e-21
Identities = 100/126 (79%), Gaps = 6/126 (5%)
Strand=Plus/Minus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| |||||||| ||| ||| |||||| ||||||||
Sbjct 2711 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTGGGCTGTGG 2653
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||| | | |||||| | | |||||||| ||||||| || |||||||||| |||||
Sbjct 2652 TTTTGATGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT-----TCACT 2598
Query 408 AATTAG 413
| ||||
Sbjct 2597 ATTTAG 2592
>seq2126
Length=3763
Score = 104 bits (114), Expect = 8e-20
Identities = 90/110 (82%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| |||||||| ||||| ||| |||| |||||||| | ||| |||||||||||||||
Sbjct 2723 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCC---AGGCCTCTTCCCTTGGCTGTGG 2778
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||| ||| |||||| | | |||||||| ||||||| || ||||||||||
Sbjct 2779 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT 2828
>seq2997
Length=1827
Score = 96.9 bits (106), Expect = 1e-17
Identities = 97/124 (78%), Gaps = 8/124 (6%)
Strand=Plus/Plus
Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349
|| |||||| ||||| ||| |||| ||||||| ||| ||| |||||| ||||||||||
Sbjct 1102 AGGTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTGGGCTGTGGTT 1159
Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409
| ||| |||||| | | |||||||| ||||||| || || ||||||| ||||||
Sbjct 1160 TTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCAT-CATTCAT-----TCACTAT 1213
Query 410 TTAG 413
||||
Sbjct 1214 TTAG 1217
>seq5
Length=19439814
Score = 77.0 bits (84), Expect = 1e-11
Identities = 79/101 (78%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||| | || || || |||||| || | ||| || ||| || | ||||||||||
Sbjct 10363883 CTTAAGAAAATCCTAAGTCACTCCCACCATGTACT-GCACTTCATTAGACTTCTTCACTT 10363941
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||| | ||||||| ||||||||||||| ||||||
Sbjct 10363942 TGACATTCTGGACACTGGGATGAAATCACATTGCATCAACA 10363982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635101593664
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