Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1410 266 1e-68 seq1712 264 4e-68 seq3320 233 6e-59 seq276 188 2e-45 seq883 168 2e-39 seq3233 158 4e-36 seq1464 152 2e-34 seq658 118 3e-24 seq3384 107 6e-21 seq2126 104 8e-20 seq2997 96.9 1e-17 seq5 77.0 1e-11 >seq1410 Length=16747 Score = 266 bits (294), Expect = 1e-68 Identities = 177/197 (90%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||| Sbjct 7381 GCTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCA 7322 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| Sbjct 7321 ACAGGGTCTTCTTTCCCCGCTGATTCCACCAAGCCTGTTCCCTTTGCTGTGGTTTCGCTG 7262 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| ||||||||||||||||||| || |||||||||||| | ||||||||||||| Sbjct 7261 GATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCACATCACTAATTAGAT 7202 Query 416 GACGAGGCATTTGGCTA 432 || | ||||| ||||| Sbjct 7201 GATGTAGCATTAGGCTA 7185 Score = 134 bits (148), Expect = 5e-29 Identities = 92/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || ||||| |||||||||||| ||||| ||| || || || ||| ||||||||||||| Sbjct 16539 CTGCCTTAGGAGAGTCATAGTCACTCCTGCCACTTGCCTGCACTTCATTGAATTTCTTCA 16598 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 16599 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCATCAACA 16642 >seq1712 Length=4852 Score = 264 bits (292), Expect = 4e-68 Identities = 155/161 (96%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 60 Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| Sbjct 61 GGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC 120 Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 ||||||||||||||||||||||||||||||||| ||| || Sbjct 121 GCGTCACTAATTAGATGACGAGGCATTTGGCTATATTACGA 161 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4696 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 4755 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 4756 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 4796 >seq3320 Length=3091 Score = 233 bits (258), Expect = 6e-59 Identities = 170/197 (86%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||| ||| ||||||||||||||||| | | || ||| | || |||||||||||||| Sbjct 1952 GCTACCATTTATTCTACACCTCTCATGACTCTTTACAGCACCAGATTAGAGTCAAGCTCA 1893 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||| |||||||| ||||||| |||||||| |||| ||||||||| Sbjct 1892 ACAGGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGTTCCCTTTGCTGAGGTTTCGCTG 1833 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| ||| |||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 1832 GATAGTAGGTAGAGACAGTGGGAATCTCGTTCATCCATTCATGCACATCACTAATTAGAT 1773 Query 416 GACGAGGCATTTGGCTA 432 ||| |||||| ||||| Sbjct 1772 GACATGGCATTAGGCTA 1756 >seq276 Length=453455 Score = 188 bits (208), Expect = 2e-45 Identities = 166/206 (81%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||| || ||||||||||| ||| ||||| | | || | || ||||||| | Sbjct 431492 CTCCCACTTTTTTTACACCTCTCATGTCTCCTCACAGTGCCACACCAAAGGCAAGCTCCA 431551 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||| ||||| ||||||||| ||||||| ||| |||||||||| ||| | Sbjct 431552 TAGGTTCTTCCTTCCCTGCTGATTCCACCAAGCCTGTT-----GGCTGTGGTTGGGCTGG 431606 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| || ||||| |||||||||||||||| ||||||||| | ||||||||||||||| Sbjct 431607 ATAGCAGGTAGGGGCAGTGGGAATCTCGTTCGTCCATTCATACTTGTCACTAATTAGATG 431666 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||| ||||| || Sbjct 431667 ACGAGGCATTTGGCTA-TTTAAGGGA 431691 >seq883 Length=56780 Score = 168 bits (186), Expect = 2e-39 Identities = 127/149 (85%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||||||| ||| |||||||| ||||| || |||||||||||||||| Sbjct 9365 CAGGCTCAACAAGGTCTTCTTCCCCTGCTGATTCTGCCAAACCTGTTCCCTTGGCTGTGG 9424 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC----ATTCATGCGCGT 403 |||| || |||||||| ||||||| |||||||||| ||| || | ||||| | ||| Sbjct 9425 TTTCACTGGATAGTAGGTAGGGACTGTGGGAATCTTGTTCATTCATTTATTCACTCACGT 9484 Query 404 CACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||| |||||||||||||| Sbjct 9485 CACTAATTAGATGATGAGGCATTTGGCTA 9513 Score = 113 bits (124), Expect = 1e-22 Identities = 101/126 (80%), Gaps = 7/126 (6%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| ||||||| ||| ||| ||||||||||||||| Sbjct 29289 CAGGCTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 29232 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| |||||| | | |||||||| ||||||| || |||||||||| ||||| Sbjct 29231 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT-----TCACT 29177 Query 408 AATTAG 413 | |||| Sbjct 29176 ATTTAG 29171 Score = 113 bits (124), Expect = 1e-22 Identities = 101/126 (80%), Gaps = 7/126 (6%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| ||||||| ||| ||| |||||| |||||||| Sbjct 39718 CAGGCTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTGGGCTGTGG 39661 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| ||| |||||| | | |||||||| |||||||||| |||||||||| ||||| Sbjct 39660 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCGTTCATCCATTCAT-----TCACT 39606 Query 408 AATTAG 413 | |||| Sbjct 39605 ATTTAG 39600 >seq3233 Length=3231 Score = 158 bits (174), Expect = 4e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1701 CTTAAGAGAGTCATAGCTACTCCCGCCGTTTACCCGCGCTTCATTGAAGTTCTTCACTTT 1760 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| |||||| Sbjct 1761 GACATTCAGAGCACTGGGCAGAAATCACATTGCATCAACA 1800 >seq1464 Length=14228 Score = 152 bits (168), Expect = 2e-34 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 92 TTAAGAGAGTCATAGCTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTG 33 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||||||||||||||||||||||||||||||| Sbjct 32 ACATTCAGAGCACTGGGCAGAAATCACATTGC 1 >seq658 Length=101349 Score = 118 bits (130), Expect = 3e-24 Identities = 93/110 (85%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| |||||||| ||| ||| ||||||||||||||| Sbjct 44955 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 44897 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||| ||| |||||| | | |||||||| |||||||||| |||||||||| Sbjct 44896 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCGTTCATCCATTCAT 44847 Score = 107 bits (118), Expect = 6e-21 Identities = 100/126 (79%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| |||||||| ||| ||| ||||||||||||||| Sbjct 51003 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTTGGCTGTGG 50945 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| | | |||||| | | |||||||| ||| ||| || |||||||||| ||||| Sbjct 50944 TTTTGATGGATAGTGGGTCAGGACAGTGAGAACCTCCTTCATCCATTCAT-----TCACT 50890 Query 408 AATTAG 413 | |||| Sbjct 50889 ATTTAG 50884 >seq3384 Length=2756 Score = 107 bits (118), Expect = 6e-21 Identities = 100/126 (79%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| |||||||| ||| ||| |||||| |||||||| Sbjct 2711 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCCACCAGGCCTCTTCCCTGGGCTGTGG 2653 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| | | |||||| | | |||||||| ||||||| || |||||||||| ||||| Sbjct 2652 TTTTGATGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT-----TCACT 2598 Query 408 AATTAG 413 | |||| Sbjct 2597 ATTTAG 2592 >seq2126 Length=3763 Score = 104 bits (114), Expect = 8e-20 Identities = 90/110 (82%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || |||||||| ||||| ||| |||| |||||||| | ||| ||||||||||||||| Sbjct 2723 CAGGCTCAACAAGGTCTGCTTCCCCC-CTGATTCC---AGGCCTCTTCCCTTGGCTGTGG 2778 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||| ||| |||||| | | |||||||| ||||||| || |||||||||| Sbjct 2779 TTTTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCATCCATTCAT 2828 >seq2997 Length=1827 Score = 96.9 bits (106), Expect = 1e-17 Identities = 97/124 (78%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 || |||||| ||||| ||| |||| ||||||| ||| ||| |||||| |||||||||| Sbjct 1102 AGGTCAACAAGGTCTGCTTCCCCC--TGATTCCACCAGGCCTCTTCCCTGGGCTGTGGTT 1159 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | ||| |||||| | | |||||||| ||||||| || || ||||||| |||||| Sbjct 1160 TTGCTGGATAGTGGGTCAGGACAGTGAGAATCTCCTTCAT-CATTCAT-----TCACTAT 1213 Query 410 TTAG 413 |||| Sbjct 1214 TTAG 1217 >seq5 Length=19439814 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||| | || || || |||||| || | ||| || ||| || | |||||||||| Sbjct 10363883 CTTAAGAAAATCCTAAGTCACTCCCACCATGTACT-GCACTTCATTAGACTTCTTCACTT 10363941 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||| | ||||||| ||||||||||||| |||||| Sbjct 10363942 TGACATTCTGGACACTGGGATGAAATCACATTGCATCAACA 10363982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635101593664