Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020 15-09-14] 2,933 sequences; 1,036,003,386 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2527 260 5e-67 seq2498 208 2e-51 seq2635 78.8 3e-12 >seq2527 Length=97327 Score = 260 bits (288), Expect = 5e-67 Identities = 163/176 (93%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 257 CTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 316 |||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 80713 CTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 80772 Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 80773 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCRCTGGATAGTAGGTAGGGACAGTGG 80832 Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 80833 GAATCTTGTTCATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTA 80888 Score = 149 bits (164), Expect = 2e-33 Identities = 94/101 (93%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 435 TTAAGAGAGT--CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct 97131 TTAAGAGAGTGTCATAGTTACTCCCACCGTTTACCCACGCTTCATTGAATTTCTTCACTT 97190 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 97191 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 97231 >seq2498 Length=114767 Score = 208 bits (230), Expect = 2e-51 Identities = 158/185 (85%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 ||||||| ||| |||||| | | |||||||||||| |||||||||||||| |||| Sbjct 108052 CCTCTCAYGTCTCTTCACAGCGGCAGACTAGAGTCAAACTCAACAGGGTCTT---TCCCA 108108 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||| |||| |||||||| ||||||||||||||||||| || | |||||| ||||||||| Sbjct 108109 GCTAATTCTGCCAAGCCTATTCCCTTGGCTGTGGTTTCTCTGGGTAGTAGGTAGGGACAG 108168 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||||||||| ||| |||||||||||| | ||||||||||||||| || ||||||||||| Sbjct 108169 TGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATGAYGAAGCATTTGGCTA- 108227 Query 434 CTTAA 438 ||||| Sbjct 108228 CTTAA 108232 Score = 165 bits (182), Expect = 3e-38 Identities = 114/130 (88%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||| | |||||||| ||||||||| ||||||||||||||||||| || |||||| Sbjct 100230 TCTTCTTTCTCAGCTGATTCTGCCAAGCCCTTTCCCTTGGCTGTGGTTTCACTGGATAGT 100289 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 | ||||||| ||||||||||| || ||| ||||||| || ||||||||||||||| ||| Sbjct 100290 RGGTAGGGACTGTGGGAATCTCATTCATCTATTCATGTGCATCACTAATTAGATGATGAG 100349 Query 422 GCATTTGGCT 431 | |||||||| Sbjct 100350 GTATTTGGCT 100359 Score = 120 bits (132), Expect = 1e-24 Identities = 93/110 (85%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| Sbjct 49345 CAGGCTCAACAGGGTCTTG---CCCCACTGATTCCACCAAGCCCCTTCCCTTGGCTGTGG 49401 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||| || |||||| | ||||||| |||||||||| || || ||||||| Sbjct 49402 TTTCACTGGATAGTGGGTAGGGACTGTGGGAATCTTATTCATTCATTCAT 49451 Score = 105 bits (116), Expect = 2e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 65013 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCAGTTGGACATT 65072 Query 500 CAGAGCAC 507 |||||||| Sbjct 65073 CAGAGCAC 65080 Score = 80.6 bits (88), Expect = 9e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 || ||| | |||||| || |||| || ||||| | || || ||||||| || |||||| Sbjct 101085 TTGGCTGGGTAGTAGGTACAGACAATGAGAATCACATTCGTCTATTCATGAGCATCACTA 101144 Query 409 ATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||| Sbjct 101145 GTTAGATGACGAGGCATTTGGCTA 101168 >seq2635 Length=3962349 Score = 78.8 bits (86), Expect = 3e-12 Identities = 51/55 (93%), Gaps = 1/55 (2%) Strand=Plus/Plus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||| ||||||||| ||||||||||||||||||||||| |||||| Sbjct 639748 GAATTTCTTAACTT-GACATTCAGGGCACTGGGCAGAAATCACATTGCATCAACA 639801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635152039584