Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zosterops_20lateralis_20melanops_20[genbank_20GCA_5F001281735.1_2020
15-09-14] 2,933 sequences; 1,036,003,386 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2527 260 5e-67
seq2498 208 2e-51
seq2635 78.8 3e-12
>seq2527
Length=97327
Score = 260 bits (288), Expect = 5e-67
Identities = 163/176 (93%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 257 CTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 316
|||| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 80713 CTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 80772
Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 80773 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCRCTGGATAGTAGGTAGGGACAGTGG 80832
Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 80833 GAATCTTGTTCATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTA 80888
Score = 149 bits (164), Expect = 2e-33
Identities = 94/101 (93%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 435 TTAAGAGAGT--CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 97131 TTAAGAGAGTGTCATAGTTACTCCCACCGTTTACCCACGCTTCATTGAATTTCTTCACTT 97190
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||||
Sbjct 97191 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 97231
>seq2498
Length=114767
Score = 208 bits (230), Expect = 2e-51
Identities = 158/185 (85%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313
||||||| ||| |||||| | | |||||||||||| |||||||||||||| ||||
Sbjct 108052 CCTCTCAYGTCTCTTCACAGCGGCAGACTAGAGTCAAACTCAACAGGGTCTT---TCCCA 108108
Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373
||| |||| |||||||| ||||||||||||||||||| || | |||||| |||||||||
Sbjct 108109 GCTAATTCTGCCAAGCCTATTCCCTTGGCTGTGGTTTCTCTGGGTAGTAGGTAGGGACAG 108168
Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433
||||||||| ||| |||||||||||| | ||||||||||||||| || |||||||||||
Sbjct 108169 TGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATGAYGAAGCATTTGGCTA- 108227
Query 434 CTTAA 438
|||||
Sbjct 108228 CTTAA 108232
Score = 165 bits (182), Expect = 3e-38
Identities = 114/130 (88%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
||||||||| | |||||||| ||||||||| ||||||||||||||||||| || ||||||
Sbjct 100230 TCTTCTTTCTCAGCTGATTCTGCCAAGCCCTTTCCCTTGGCTGTGGTTTCACTGGATAGT 100289
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
| ||||||| ||||||||||| || ||| ||||||| || ||||||||||||||| |||
Sbjct 100290 RGGTAGGGACTGTGGGAATCTCATTCATCTATTCATGTGCATCACTAATTAGATGATGAG 100349
Query 422 GCATTTGGCT 431
| ||||||||
Sbjct 100350 GTATTTGGCT 100359
Score = 120 bits (132), Expect = 1e-24
Identities = 93/110 (85%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
|| ||||||||||||||| |||| |||||||| |||||||| |||||||||||||||
Sbjct 49345 CAGGCTCAACAGGGTCTTG---CCCCACTGATTCCACCAAGCCCCTTCCCTTGGCTGTGG 49401
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
|||| || |||||| | ||||||| |||||||||| || || |||||||
Sbjct 49402 TTTCACTGGATAGTGGGTAGGGACTGTGGGAATCTTATTCATTCATTCAT 49451
Score = 105 bits (116), Expect = 2e-20
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499
||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 65013 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCAGTTGGACATT 65072
Query 500 CAGAGCAC 507
||||||||
Sbjct 65073 CAGAGCAC 65080
Score = 80.6 bits (88), Expect = 9e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
|| ||| | |||||| || |||| || ||||| | || || ||||||| || ||||||
Sbjct 101085 TTGGCTGGGTAGTAGGTACAGACAATGAGAATCACATTCGTCTATTCATGAGCATCACTA 101144
Query 409 ATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||
Sbjct 101145 GTTAGATGACGAGGCATTTGGCTA 101168
>seq2635
Length=3962349
Score = 78.8 bits (86), Expect = 3e-12
Identities = 51/55 (93%), Gaps = 1/55 (2%)
Strand=Plus/Plus
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 639748 GAATTTCTTAACTT-GACATTCAGGGCACTGGGCAGAAATCACATTGCATCAACA 639801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635152039584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |