Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1210 147 3e-33 seq1467 145 1e-32 seq6032 138 2e-30 seq6283 131 3e-28 seq4084 129 9e-28 seq2707 107 3e-21 seq179 100 4e-19 seq4037 80.6 4e-13 >seq1210 Length=32045156 Score = 147 bits (162), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| ||| |||||| |||||| | Sbjct 25433558 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAATT-C 25433501 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 | |||| | | || ||||||||| | || ||||||| || ||||| | || Sbjct 25433500 CACGTTCATGGGAAATAATTGCAATCCCCGATTCCCATCATGAATGGGGTTCAATGGGTT 25433441 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||||| | ||| | | || | ||| ||||||||| | ||||| Sbjct 25433440 ACCCGCACCTGTCAGTATAGGGTAGACACATGCTGAGCCAGTCAGTGTAGTGTACGTGCA 25433381 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 25433380 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 25433328 >seq1467 Length=19222777 Score = 145 bits (160), Expect = 1e-32 Identities = 176/234 (75%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| ||| |||||| |||||| | Sbjct 5720970 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 5720917 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || || ||||||| | |||||||||| || ||||| | || Sbjct 5720916 CTCGTTCATGAGGAATAATTGCAGTCCCTGATCCCCATCATGAATGGGGTTCAACGGGTT 5720857 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| |||||||||| ||| | | || | ||| ||||||||||||| |||| Sbjct 5720856 ATCCGCACCTGTCGGCGTAGGGTAGACACACACTGAGCCAGTCAGTGTAGCGCGTGTGCA 5720797 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||| |||||| || |||||||| ||||| Sbjct 5720796 GCCCTGGACATCTAAGGGCATCACAGATCTGTTAATG-CTCAAACTCGGGTGGC 5720744 >seq6032 Length=9105470 Score = 138 bits (152), Expect = 2e-30 Identities = 180/239 (75%), Gaps = 15/239 (6%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||||| |||||| ||||| || |||||| |||||| || Sbjct 6767533 TACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTACTGGGAATT-CC 6767590 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117 || || | | || ||||||||| |||| |||||| |||| ||||||| Sbjct 6767591 TCATTCATGGGGAATAATTGCAATCCCTGATCCACATCAC----AAATGGGGTTCAAAGG 6767646 Query 118 -TTACCCGG-ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| | | ||||| || ||| | | || || ||| | |||||||||| | Sbjct 6767647 GTTACCCCGCAACTGTCAGCACAGGGTAGACACACGCTGAGCCATTTAGTGTAGCGCATG 6767706 Query 176 TGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||| ||||||||||||||||||||||||||||| ||||| || | ||||| Sbjct 6767707 TGCAGACCCAGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCGGTGGC 6767763 >seq6283 Length=47998352 Score = 131 bits (144), Expect = 3e-28 Identities = 149/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| ||| |||| | |||||| | Sbjct 20489113 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTAGTGGGAATT-C 20489170 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 20489171 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 20489230 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | | || ||| |||||||||||||||||| Sbjct 20489231 ACCCGCACCTGTCGGCGTAGGGTAGACGCACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 20489290 Query 180 GCCCAGAACATCTAAG 195 |||| | |||| |||| Sbjct 20489291 GCCCCGGACATATAAG 20489306 >seq4084 Length=1028223 Score = 129 bits (142), Expect = 9e-28 Identities = 175/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| || |||| | ||| || ||||| ||| |||||| |||||| | Sbjct 991508 GTACAAAGGGCAAGGACTTAATCAATGTGAGTTT-ATGACCCGCACTTACTGGGAATT-C 991565 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT----TCAA-A 115 || ||| | | || ||||||||| | ||||||||||| |||| |||| | Sbjct 991566 CTTGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGCTCAACA 991621 Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 | ||||| | |||||| ||| ||| | | || || ||| ||||||||| | ||| Sbjct 991622 GGTTACCTGCACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGTGTGCG 991681 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| || | || |||||||||||||||||||||||||| ||||| || ||||| Sbjct 991682 TGCAATCCTGGACCTCTAAGGGCATCACAGACCTGTTATT-ACTCAATCTCAGGTGGC 991738 >seq2707 Length=1189 Score = 107 bits (118), Expect = 3e-21 Identities = 106/133 (80%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 222 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 165 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 164 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 105 Query 120 ACCCGGACCTGTC 132 ||||| ||||||| Sbjct 104 ACCCGCACCTGTC 92 >seq179 Length=33312291 Score = 100 bits (110), Expect = 4e-19 Identities = 166/229 (72%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||| || || |||||| |||||| ||||| || ||| || || ||| | Sbjct 12093476 GTACAAAAGGCAGGAACTTAATCAACGTGAGCTT-ATGACCTGCACTTCCTGGGTATT-C 12093533 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118 ||| || | | || ||||| ||| ||||||||| | || ||| || | | Sbjct 12093534 CTCATTCATGGGAAATAATTGAAAT-------CCCCATCACAAATGGGATT-CATCGTGT 12093585 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGT 176 ||||| |||||| || | | | | ||| ||| ||| |||||||||||| ||| Sbjct 12093586 TACCCACACCTGTTGGTGTACG-GCT-GACACGTGCTGAGCCAGTCAGTGTAGCGCACGT 12093643 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| | ||||||||||||| |||||||||||||||| ||||| || Sbjct 12093644 TCAGCCCTGGACATCTAAGGGCAACACAGACCTGTTATTG-CTCAATCT 12093691 >seq4037 Length=5918428 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 1676636 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 1676579 Query 61 CTCGTT 66 |||||| Sbjct 1676578 CTCGTT 1676573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751948320210