Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq5510 113 3e-23 seq4084 86.0 3e-15 seq179 71.6 8e-11 >seq5510 Length=6800776 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| |||| |||| |||||| |||| Sbjct 4698689 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCCG 4698748 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| |||| ||| |||||||||||||||||| |||||||| Sbjct 4698749 GATCGCTAGTCGGCATCATTTATGGTCGGAACTACGACGGTATCTGATTGTCTTCGA 4698805 >seq4084 Length=1028223 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | || ||| || | |||| |||||| ||| Sbjct 992039 GAACCCAAAGACTTTGGTTTCCCAGAAACCGCCCAGTGGGTCATGGGAATAACACTGCCG 992098 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||| ||||| |||| |||| || ||| ||||||||||||||| Sbjct 992099 GATCACTAGTCAGCATTGTTTATGGTTGGAACTATGATGGTGTCTGATCGTCTTCGA 992155 >seq179 Length=33312291 Score = 71.6 bits (78), Expect = 8e-11 Identities = 86/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||||| |||| |||| || ||| |||| ||| |||| ||||| || Sbjct 12094000 GAACCTAAAGAATTTGGTTTCCCGGAAGCTGCCTGGCGGGTCATGGGAATAACGCTGCTG 12094059 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||| |||| |||| | | | ||||||| |||||||||||||||| || Sbjct 12094060 AATCACTAGTCAGCATCATTTATGATCAGAACTACGATGGTATCTGATCGTCTTTGA 12094116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278381484660