Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq179 161 2e-37 seq1467 129 1e-27 seq4084 120 6e-25 seq6032 116 7e-24 seq563 96.9 6e-18 >seq179 Length=33312291 Score = 161 bits (178), Expect = 2e-37 Identities = 208/282 (74%), Gaps = 15/282 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 12094396 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 12094337 Query 99 CAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| |||||||| ||||||||| | | |||| Sbjct 12094336 CAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCAGTTC 12094278 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | | |||||| |||||| | |||| | | Sbjct 12094277 TATTTTGTTGGTTTTCGGAACTGGAGCCACGATTAAAAGGGATGGCTGGGG------GCA 12094224 Query 218 TTCA-ATTGT-----CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 |||| ||||| |||| ||||||||||||| | ||||| ||| | | |||| Sbjct 12094223 TTCATATTGTGACACTAGAGCTGAAATTCTTGGACCAGTGCAAGACAAACCAAAGTGAAA 12094164 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || ||||| |||||||||||||||| |||||||||| Sbjct 12094163 GCATTTGCCAAGAATGTTTTCATTAATCA-AAAACGAAAGTT 12094123 >seq1467 Length=19222777 Score = 129 bits (142), Expect = 1e-27 Identities = 194/268 (72%), Gaps = 12/268 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | ||||| | | | | ||||||||||||||||||| ||| Sbjct 5720054 ATGCTCTTAACTGAGTGTCCTGGGGATCT-GAAGTGTTTACTTTGAAAAAATTAGCATGT 5720112 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| ||||| |||||| ||| | |||||| ||||||||| | || || Sbjct 5720113 TCAAAGCAGGCTGGTTGCTGGAATACTCCAGCTAGCAATAATGGAATAGGAC-TCCGTTT 5720171 Query 157 CTATTTTGTTGGTTTCTAGGACC----GCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||| | ||| | |||| ||||||| ||||| | |||| | Sbjct 5720172 CTATTTTGTTGGTTT-TCGGAACTAGGGCCG---TGATTAAGAGGGACGGCCGGGAACAT 5720227 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||| | | |||||||||||| ||||| | |||| ||| | | ||||| Sbjct 5720228 TTGTACTGTGCCGCTAGAGGTGAAATTTTTGGACCAGTGCAAGATGAACCAATATGAAAG 5720287 Query 273 CGTTCACCAAGGATGTTTTCATTAATCA 300 | || ||||| || |||||||||| || Sbjct 5720288 CATTTGCCAAGAATATTTTCATTAAACA 5720315 >seq4084 Length=1028223 Score = 120 bits (132), Expect = 6e-25 Identities = 127/165 (77%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| | || ||||||||||||||||||||||||| Sbjct 993397 ATGCTCTTAACTGAGTGTCCTGGGGGTCTGAAACATTTACTTTGAAAAAATTAGAGTGTT 993338 Query 99 CAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||| || || |||||| ||| |||||||| ||||||||| | | | Sbjct 993337 CAAAGCAGGC---TGGTCACCAGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCAG 993282 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||||||||||| || || | | |||||||| ||||| Sbjct 993281 TTCTATTTTGTTGGTTTTCAGAACTGGGGCCATGATTAAGAGGGA 993237 >seq6032 Length=9105470 Score = 116 bits (128), Expect = 7e-24 Identities = 175/247 (71%), Gaps = 20/247 (8%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132 ||||||||||||||||||| ||||||||||||||| | ||| ||| | ||| || Sbjct 6768412 TTTACTTTGAAAAAATTAGTGTGTTCAAAGCAGGCTGGTCGCTGGAAAATTCCAGCTAGG 6768353 Query 133 AATAATAGAATAGGACGTGCGGTTCTA-TTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||| ||||||||| | |||||||| |||||||||||| | | || | | || ||| Sbjct 6768352 AATAATGGAATAGGAC-TCCGGTTCTATTTTTGTTGGTTTTTGGAACTGGGGCCATTATT 6768294 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || |||||| | ||| | | ||||||||||||||||| Sbjct 6768293 AAGAGGGATGGCCGGAG----------------GCTAGAGGTGAAATTCTTGGGCCGGCG 6768250 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 || | ||| | | |||||| || ||||| |||||||||||||||| |||| |||| Sbjct 6768249 CAAAATGAACCAAAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAG 6768191 Query 312 TTAGGGG 318 | || || Sbjct 6768190 TCAGAGG 6768184 >seq563 Length=18600682 Score = 96.9 bits (106), Expect = 6e-18 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAATACATTAGCATGGAA 134 ||| ||||||||||||| ||||||||| ||||| | || |||||| ||| |||| Sbjct 3235652 TACATTGAAAAAATTAGCGTGTTCAAA-CAGGCTGGTCACTAGAATACTCCAGCTAGGAA 3235594 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAA 193 ||| |||||| || | || |||||| |||| |||| ||||| | | | |||| ||| Sbjct 3235593 CAATGGAATAGCAC-TCTGGGTCTATTGTGTTTGTTT-TAGGAACTGGGGCCATGAATAA 3235536 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| | | |||| | ||| | || ||||||||||||||||||| | Sbjct 3235535 GAGGGATGGCCAGGGGCATTTGTACTGTGCTGCTAGAGGTGAAATTCTTGGATGGGGGCA 3235476 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT-TAATCA 300 |||| || | || |||| ||| ||||| ||||||| | |||||| Sbjct 3235475 AGACAAATGAAAGCAAAAGAGTTTGCCAAGAATGTTTTTTTATAATCA 3235428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915135075712