Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq761 140 1e-30 seq3682 125 3e-26 seq5657 114 5e-23 seq6780 113 2e-22 seq563 113 2e-22 seq4084 105 3e-20 seq1467 105 3e-20 seq2195 98.7 4e-18 seq2722 96.9 1e-17 seq4053 87.8 7e-15 seq3207 75.2 5e-11 >seq761 Length=1290 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||| ||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 678 GGACCTGAAAAATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 737 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||||||||| | ||||||||||||||| Sbjct 738 GGTCCGTAGCGGTCCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGCGA 792 >seq3682 Length=31185698 Score = 125 bits (138), Expect = 3e-26 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||||| || |||| |||||| | | ||||| ||||||| Sbjct 5643333 GAGTCAGGTTGCTTGGGAATGCAGCTCGAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 5643274 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 5643273 ACCGGCAGGAGACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 5643214 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||| || || ||||||| ||| | ||| || || ||| Sbjct 5643213 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGTTG 5643170 >seq5657 Length=28110136 Score = 114 bits (126), Expect = 5e-23 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 16872197 GGACCCCAAAGATGGTGAACTATGCCTGGGCAGAGCGAAGCCAGAGGAAACTCTGGTGGA 16872138 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | |||||| ||| |||||||||| || | | ||||||||||||| Sbjct 16872137 GGTCTGTAGCGGTCCTGATGTGCAAATCGGTCACCTGACCTGGGTATAGGGGC 16872085 Score = 105 bits (116), Expect = 3e-20 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| |||||| Sbjct 16873043 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAA 16872984 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||| ||||| |||| | | | ||||| ||||||| |||||| | Sbjct 16872983 ACTGGCACAAGACTGATAGTCAACAACAACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 16872924 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTT 187 |||||||| || || ||||||| |||| Sbjct 16872923 AGAGAGTTCAAGAGGGCGTGAAACTGTT 16872896 Score = 86.0 bits (94), Expect = 3e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||| || || | |||||| ||||||||| ||||||||||| ||| |||||||||||| Sbjct 20225199 AGCGTACATGCTAGGACCCTAAAGATGGTCAACTATGCCTGGGCAGGATGAAGCCAGAGG 20225140 Query 616 AAACTCTGGTGGAGG 630 ||||||||||||||| Sbjct 20225139 AAACTCTGGTGGAGG 20225125 >seq6780 Length=22457707 Score = 113 bits (124), Expect = 2e-22 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || | |||||| | | ||||| ||||||| Sbjct 10219131 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGAGTGGTAAACTCCATCTAAGGCTAAAT 10219190 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| || || ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 10219191 ACCGGCACGACACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 10219250 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || | ||||| |||| | ||| || || Sbjct 10219251 AGAGAGTTCAAGAGGGCATGAAACTGTTAAGAGGTAAACG 10219290 >seq563 Length=18600682 Score = 113 bits (124), Expect = 2e-22 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 144930 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 144989 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 144990 ACCGGCACGAGACCGATAGTCAACAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 145049 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || | ||||| |||| | ||| || Sbjct 145050 AGAGAGTTCAAGAGGGCCTGAAACTGTTAAGAGGTAA 145086 Score = 111 bits (122), Expect = 7e-22 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 145730 GGACCCGAAAGGTGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 145789 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || | || ||| ||| | ||||||||| || || | |||||| |||| Sbjct 145790 GGTCAGTAGTGGTCCTGACATGCAAATCGGTCATCCGACCTGGGTAAAGGG 145840 >seq4084 Length=1028223 Score = 105 bits (116), Expect = 3e-20 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 988404 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 988345 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| | ||||| | | ||||| || |||| |||||| | Sbjct 988344 ACTGGCACGAGACCGATAGTAAAGAAGTACCATAAAGGAAAGTTG-AAAGAACTTTGAAG 988286 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||| ||| | ||| || || Sbjct 988285 AGAGAGTTCAAGAGGGTGTGAAACCGTTAAGAGGTAAACG 988246 >seq1467 Length=19222777 Score = 105 bits (116), Expect = 3e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || |||| |||||| | | ||||| |||||| Sbjct 5724116 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAA 5724175 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 5724176 ACTGGCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 5724235 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 | |||||| || || |||||| Sbjct 5724236 ATAGAGTTCAAGAGGGTGTGAAA 5724258 >seq2195 Length=14595547 Score = 98.7 bits (108), Expect = 4e-18 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1277603 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1277662 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 1277663 ACCGGCACGAGACCGATAGTCAACAAGTACCATAAAGGAAAGTTGAAAAGAACTTTGAAG 1277722 Query 160 AGAGAGTTAAAAAG 173 | |||||| || || Sbjct 1277723 ACAGAGTTCAAGAG 1277736 Score = 98.7 bits (108), Expect = 4e-18 Identities = 122/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATT---TCT---TCTAAAG 93 |||| | |||| ||||||||||||| | || || |||||| | ||| ||||| | Sbjct 10971784 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTACATCTAAGG 10971725 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| ||| ||||||||||| ||||||| | | ||||| ||||||| ||| Sbjct 10971724 CTAAATACCGGCACGAGACCGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACT 10971665 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| | |||||||| || || ||||||| ||| | ||| || || Sbjct 10971664 TTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 10971619 >seq2722 Length=16752973 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 14626780 GGACCTGAAAGATGGTAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 14626839 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 || || || ||| ||| || | ||| | || || ||| ||||| Sbjct 14626840 GGTGCGTAGTGGTCCTGTTGTAC-AATTGGTCATCCAATCTGGGT 14626883 Score = 82.4 bits (90), Expect = 3e-13 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | || | | |||||| | | ||||| ||||||| Sbjct 14625995 GAGTCAGGTTGTTTGGGAATGCAGCCCAAAGAGAGTGGTAAACTCCATCTAAGGCTAAAT 14626054 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||| || || ||||||| | | ||||| ||||||| || ||| | Sbjct 14626055 ACCGGCACAAGACTGACAGTCTACAAGTACCATAAGGGAAAGTTGAAAAGAACATTGAAG 14626114 Query 160 AGAGAGTT 167 |||||||| Sbjct 14626115 AGAGAGTT 14626122 >seq4053 Length=10433505 Score = 87.8 bits (96), Expect = 7e-15 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3025848 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3025907 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| |||| ||||||| || | |||| ||||||| ||||| | Sbjct 3025908 ACCGGCGCAAGACCAATAGTCAACAAGTACCGTAAGGAAAAGTTGAAAAGATCTTTGAAG 3025967 Query 160 AGAGAG 165 |||||| Sbjct 3025968 AGAGAG 3025973 >seq3207 Length=25689087 Score = 75.2 bits (82), Expect = 5e-11 Identities = 79/102 (77%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || | ||||| |||| | ||||| |||||| || | |||||||||| Sbjct 5422839 GAGCATAAGTGCTAGGACC---AAGA-GAAGAACTCTGCCTGGGGAGAGCGAAGCCAGAG 5422894 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656 |||||||||||||||| || || ||| ||| | |||||||| Sbjct 5422895 AAAACTCTGGTGGAGGCCCGTAGTGGTGCTGACATGCAAATC 5422936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079847833700