Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3682 161 5e-38 seq6358 158 6e-37 seq3332 158 6e-37 seq2827 149 3e-34 seq2195 149 3e-34 seq4084 134 6e-30 seq3207 132 2e-29 seq4053 131 8e-29 seq2722 125 3e-27 seq1467 122 4e-26 seq5657 105 3e-21 seq3787 91.5 7e-17 seq2064 82.4 4e-14 seq2623 75.2 5e-12 >seq3682 Length=31185698 Score = 161 bits (178), Expect = 5e-38 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5643554 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAATAGGGAAGAGCCCAGCG 5643495 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||| ||| ||||||| || Sbjct 5643494 CCGAATCCCCGTCCCGCGGTGGGGCGCAGGAAATGTGGCATA 5643453 >seq6358 Length=37317430 Score = 158 bits (174), Expect = 6e-37 Identities = 96/102 (94%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 30710162 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCG 30710221 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||| ||| ||||||||||| ||| |||||||||| Sbjct 30710222 GCGAATCCCCGTCCCACGGTGGGGCGCAGGAAATGTGGCGTA 30710263 >seq3332 Length=5335828 Score = 158 bits (174), Expect = 6e-37 Identities = 96/102 (94%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3426874 GGAAAAAAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCG 3426933 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||| ||| |||||| ||| Sbjct 3426934 CCGAATCCCCGTCCCGCGGTGGGGCGCAGGAAATGTGGTGTA 3426975 >seq2827 Length=1139 Score = 149 bits (164), Expect = 3e-34 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 746 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| ||| |||||||| |||| ||||||| || Sbjct 745 GAATCCCCGTCCCATGGTGGGGCATGGGAAATGTGGCATA 706 >seq2195 Length=14595547 Score = 149 bits (164), Expect = 3e-34 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| Sbjct 1277382 GGAAAAGAAACTAACCAGGATTTCCTCAGTAATGGCAAGTGAACAGGGAAGAGCCCAGCG 1277441 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | |||| |||||||||||||| ||||||| || Sbjct 1277442 CCGAATCCCTGTCCCGTGGTGGGGCGCGGGAAATGTGGCATA 1277483 Score = 140 bits (154), Expect = 1e-31 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 10972005 GGAAAATAAACTAACCAGGATTCCCTCAGTAATGGCAAGTGAACAGGGAAGAGCCCAGCA 10971946 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||| | ||||||||||||||| ||| ||||||| || Sbjct 10971945 CCAAATCCCTGTCCCGCGGTGGGGCGCAGGAAATGTGGCATA 10971904 >seq4084 Length=1028223 Score = 134 bits (148), Expect = 6e-30 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 988625 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCCCAGTG 988566 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||||| ||| |||||||| | ||| ||||||| || Sbjct 988565 CTGAATCCCCGTCCCATGGTGGGGCACAGGAAATGTGGCATA 988524 >seq3207 Length=25689087 Score = 132 bits (146), Expect = 2e-29 Identities = 78/81 (96%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5017140 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCA 5017081 Query 61 CCGAATCCCCGCCCCGCGGTG 81 ||| ||||||| ||||||||| Sbjct 5017080 CCGGATCCCCGTCCCGCGGTG 5017060 >seq4053 Length=10433505 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||| |||||||||| |||||||||| || |||||||| | Sbjct 3025624 GGAAAAGAAACTAACCAGGATTCCTTCAGTAACGGTGAGTGAACAGAGATGAGCCCAGTG 3025683 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||| | ||||||| ||||| | |||| ||| Sbjct 3025684 CCGAATCCCCGTCCCACAGTGGGGCACGGGAAACGTGGTGTA 3025725 >seq2722 Length=16752973 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 14625774 GGAAAAGAAACTAACCAGGATTCCTTCAGTAATTGCGAGTGAACAGGGAAGAGCCCAGCG 14625833 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| | || | | |||||| | ||| |||||| ||| Sbjct 14625834 CTGAATCCCTGTCCTGTGATGGGGCACAGGAAATGTGGTGTA 14625875 >seq1467 Length=19222777 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| | Sbjct 5723898 GGAAAAGAAACTAACCAGGACTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCCCAGTG 5723957 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||| || || ||| || | |||| || ||| ||| Sbjct 5723958 CCGAATCCCCATCCTGCAGTGAGGTGTGGGAAATATGGTGTA 5723999 >seq5657 Length=28110136 Score = 105 bits (116), Expect = 3e-21 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| || || |||||||||| ||||||||| Sbjct 16873245 GGAAAAGAAACTAACTAGGATTCCCTCAGTAATGGTGAATGAACAGGGAGGAGCCCAGCA 16873186 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 | |||| | | | | ||||||| |||||| |||||| Sbjct 16873185 CTGAATTTCTGTTCTGTGGTGGGGTGCGGGAAATGTGG 16873148 >seq3787 Length=6911921 Score = 91.5 bits (100), Expect = 7e-17 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 38 AGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 ||||||||||||||||||||| |||||||||| | |||| |||||||| ||||| ||||| Sbjct 6887583 AGTGAACAGGGAAGAGCCCAGTGCCGAATCCCTGTCCCGTGGTGGGGCACGGGAAATGTG 6887524 Query 98 GCGTA 102 ||||| Sbjct 6887523 GCGTA 6887519 >seq2064 Length=22999 Score = 82.4 bits (90), Expect = 4e-14 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 37 GAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGT 96 ||||||||||| | |||||||| ||| ||||||| || |||||||||||||||| |||| Sbjct 20639 GAGTGAACAGGAAGGAGCCCAGAGCCAAATCCCCATCCTGCGGTGGGGCGCGGGAAATGT 20580 Query 97 GGCGT 101 ||||| Sbjct 20579 GGCGT 20575 >seq2623 Length=6826117 Score = 75.2 bits (82), Expect = 5e-12 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||| ||| |||||||| ||||||||| || ||| ||||||||||| ||||| | Sbjct 6721948 GAAAAGAAATTAATCAGGATTCTCTCAGTAACAGCAAGTAAACAGGGAAGA-CCCAGTAC 6721890 Query 62 CGAATCCC-CGCCCCGCGGTGGGGCGCGGGACATGTGG 98 | |||||| | ||| | |||| | || | |||||| Sbjct 6721889 CAAATCCCTGGTCCCATGTTGGGATGGGGAAAATGTGG 6721852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230384676960