Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq2195 77.0 2e-12 seq6283 75.2 7e-12 seq2707 73.4 2e-11 seq747 73.4 2e-11 seq5656 71.6 8e-11 seq1210 71.6 8e-11 >seq2195 Length=14595547 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||| Sbjct 10974944 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGATT 10975001 Query 109 TAATACAACGCAAGCT 124 |||| ||||| |||| Sbjct 10975002 TAAT-CAACGTGAGCT 10975016 >seq6283 Length=47998352 Score = 75.2 bits (82), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| |||| Sbjct 20489077 CTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACTTAAT 20489134 Query 113 ACAACGCAAGCT 124 ||||| |||| Sbjct 20489135 -CAACGTGAGCT 20489145 >seq2707 Length=1189 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || |||||||| || || ||||| ||||||||||||||||||| Sbjct 262 CTCACTAAACCATC-CAATCGGTAGTT-GCAACAGGCGGTGTGTACAAAGGGCAGGGACT 205 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 204 TAAT-CAACGCGAGCT 190 >seq747 Length=1387 Score = 73.4 bits (80), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || ||||| ||||| ||||| ||| ||||||||||||||| Sbjct 1290 CTCACTAAACCATC-CAATCAATAGTA-GCGACAGGCGGTGTGAACAAAGGGCAGGGACT 1347 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 1348 TAAT-CAACGCAAGCT 1362 >seq5656 Length=3371530 Score = 71.6 bits (78), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||| ||| | ||||||||| ||||||||||||||||||| Sbjct 763802 CTCACTAAACCATC-CAATCGGTGGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACT 763745 Query 109 TAATACAACGCAAGC 123 |||| |||| | ||| Sbjct 763744 TAAT-CAACACGAGC 763731 >seq1210 Length=32045156 Score = 71.6 bits (78), Expect = 8e-11 Identities = 75/92 (82%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 33 GCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGT 92 |||||| |||| | ||||||||| |||| || || |||||| | || |||||| |||| Sbjct 25433612 GCCAAT-CCGAG-GATCTCACTAAACCATC-CAATCAGTAGTA-GAGATGGGCGGTGTGT 25433557 Query 93 ACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||| |||| ||||| |||| Sbjct 25433556 ACAAAGGGCAGGGACTTAAT-CAACGTGAGCT 25433526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300779994920