Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq179 96.9 4e-18 seq4084 87.8 2e-15 seq1467 84.2 3e-14 >seq179 Length=33312291 Score = 96.9 bits (106), Expect = 4e-18 Identities = 130/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | | ||||||||| |||||||| ||| |||||| |||| Sbjct 12094264 AAACCAACAAAATAGAACTGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 12094322 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 12094323 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 12094382 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA 177 || | ||| |||| | ||| | || ||||| | |||||||| | |||||| Sbjct 12094383 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCAGTA 12094435 >seq4084 Length=1028223 Score = 87.8 bits (96), Expect = 2e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | | ||||||||| |||||||| ||| |||||| || | Sbjct 993265 AAACCAACAAAATAGAACTGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCTGGTG 993323 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||||||||||||||||||||||||| |||| ||||| || Sbjct 993324 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAATGT 993365 >seq1467 Length=19222777 Score = 84.2 bits (92), Expect = 3e-14 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| | ||||||||| |||||| | ||| |||||| || Sbjct 5720186 AAACCAACAAAATAGAAACGGA-GTCCTATTCCATTATTGCTAGCTGGAGTATTCCAGCA 5720128 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA-AGTCCTGGTTCCTCCGCACA 127 ||||||||||||||| |||||||| |||| ||||| | | | | ||| | | ||| Sbjct 5720127 ACCAGCCTGCTTTGAACATGCTAATTTTTTCAAAGTAAACACTTC-AGATCCCCAGGACA 5720069 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| | ||| | | ||||| | ||||| || | |||||| ||| | Sbjct 5720068 CTCAGTTAAGAGCATCAAGGGAGCGCTGAGAGGCAGGGGCTAGGACAAGCAGTAGCTCAC 5720009 Query 183 CGTGAGGCGGACCA 196 | || ||| ||||| Sbjct 5720008 CTTGTGGCAGACCA 5719995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595159095996